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breseq v0.33.1

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@jeffreybarrick jeffreybarrick released this 12 Aug 14:12
· 272 commits to master since this release
  • CRITICAL bug fix for a crash during the final output step when there are
    large deletions overlapping a single gene.
  • Positions of indel mutations are no longer normalized in polymorphism mode
    because this process can fail and lead to duplicate GD entries. Note: you can
    still use gdtools NORMALIZE on a GD file output by a polymorphism mode run if you
    want to compare it to GD files from consensus mode. Just be aware that NORMALIZE
    may fail if you have certain complicated cases with multiple base substitutions
    and indels near one another such that shifting them can lead to conflicts.
  • Added option to preserve evidence entries to gdtools ANNOTATE.