breseq v0.33.1
jeffreybarrick
released this
12 Aug 14:12
·
272 commits
to master
since this release
- CRITICAL bug fix for a crash during the final output step when there are
large deletions overlapping a single gene. - Positions of indel mutations are no longer normalized in polymorphism mode
because this process can fail and lead to duplicate GD entries. Note: you can
still use gdtools NORMALIZE on a GD file output by a polymorphism mode run if you
want to compare it to GD files from consensus mode. Just be aware that NORMALIZE
may fail if you have certain complicated cases with multiple base substitutions
and indels near one another such that shifting them can lead to conflicts. - Added option to preserve evidence entries to gdtools ANNOTATE.