allow strelka to run in local mode

aryarm · Jun 29, 2020 · 18bc27a · 18bc27a
1 parent ad7345f
commit 18bc27a
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/callers/illumina-strelka b/callers/illumina-strelka
@@ -41,6 +41,6 @@ rm -rf "$output_dir"/results "$output_dir"/workspace "$output_dir"/workflow* "$o
 --runDir "$output_dir" --config "$config" --exome \
 --indelCandidates "$illumina_dir"/results/variants/candidateSV.vcf.gz
 
-"$output_dir"/runWorkflow.py -j 24 && \
+"$output_dir"/runWorkflow.py -m local && \
 bgzip -d "$output_dir"/results/variants/genome.S1.vcf.gz && \
 ln -sf results/variants/genome.S1.vcf "$output_dir/illumina-strelka.vcf"