Pre CRAN 0.1.4 p3

aravind-j · Jun 16, 2020 · a67bf59 · a67bf59
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diff --git a/NEWS.md b/NEWS.md
@@ -22,6 +22,7 @@ Goldberg (1971), Bilbro and Wanjura (1982), and Fakorede and Ayoola (1980).
 * Fixed documentation errors in `FourPHFfit` and `CVGermTime`.
 * Updated documentation for `GermSpeed`, `GermSpeedAccumulated`, `CUGerm` `MeanGermRate`, `SEGermRate`, `CVG`, `MeanGermTime`, `VarGermTime`, `SEGermTime`, `GermUncertainty`, `GermSynchrony`, `MeanGermPercent`, `MeanGermNumber`,   `WeightGermPercent`, `TimsonsIndex`, `GermRateGeorge` and `GermSynchrony`.
 * Converted all equations in Rd files to `MathJax`using `mathjaxr`
+* Added long running examples to `\donttest` in `germination.indices`, `plot.FourPHFfit`, `gcdata` and `FourPHFfit.bulk`.
 
 # germinationmetrics  0.1.3
 

diff --git a/R/FourPHFfit.bulk.R b/R/FourPHFfit.bulk.R
@@ -48,6 +48,7 @@
 #'
 #' @examples
 #'
+#' \donttest{
 #' data(gcdata)
 #'
 #' counts.per.intervals <- c("Day01", "Day02", "Day03", "Day04", "Day05",
@@ -59,6 +60,7 @@
 #'                     intervals = 1:14, partial = TRUE,
 #'                     fix.y0 = TRUE, fix.a = TRUE, xp = c(10, 60),
 #'                     tmax = 20, tries = 3, umax = 90, umin = 10)
+#' }
 #'
 FourPHFfit.bulk <- function(data, total.seeds.col, counts.intervals.cols,
                             intervals, partial = TRUE,

diff --git a/R/gcdata.R b/R/gcdata.R
@@ -41,6 +41,7 @@
 #'
 #' @examples
 #'
+#' \donttest{
 #' data(gcdata)
 #' library(ggplot2)
 #' library(reshape2)
@@ -91,5 +92,6 @@
 #' germination.indices(gcdata, total.seeds.col = "Total Seeds",
 #'                     counts.intervals.cols = counts.per.intervals,
 #'                     intervals = 1:14, partial = TRUE, max.int = 5)
+#' }
 #'
 "gcdata"
diff --git a/R/germination.indices.R b/R/germination.indices.R
@@ -182,6 +182,7 @@
 #'
 #' @examples
 #'
+#' \donttest{
 #' data(gcdata)
 #'
 #' counts.per.intervals <- c("Day01", "Day02", "Day03", "Day04", "Day05",
@@ -190,6 +191,7 @@
 #' germination.indices(gcdata, total.seeds.col = "Total Seeds",
 #'                     counts.intervals.cols = counts.per.intervals,
 #'                     intervals = 1:14, partial = TRUE, max.int = 5)
+#' }
 #'
 #' @seealso This function is a wrapper around the different functions for
 #'   computation of single-value germination indices in

diff --git a/R/plot.FourPHFfit.R b/R/plot.FourPHFfit.R
@@ -61,6 +61,7 @@
 #'
 #' @examples
 #'
+#' \donttest{
 #' x <- c(0, 0, 0, 0, 4, 17, 10, 7, 1, 0, 1, 0, 0, 0)
 #' y <- c(0, 0, 0, 0, 4, 21, 31, 38, 39, 39, 40, 40, 40, 40)
 #' int <- 1:length(x)
@@ -93,6 +94,7 @@
 #' # Without y axis limits adjustment
 #' plot(fit1, limits = FALSE)
 #' plot(fit2, limits = FALSE)
+#' }
 #'
 plot.FourPHFfit <- function(x, rog = TRUE, t50.total = TRUE, t50.germ = TRUE,
                             tmgr = TRUE, mgt = TRUE, uniformity = TRUE,

diff --git a/README.html b/README.html
diff --git a/README.md b/README.md
@@ -17,12 +17,12 @@ v3](https://img.shields.io/badge/License-GPL%20v3-blue.svg)](https://www.gnu.org
 [![rstudio mirror
 downloads](https://cranlogs.r-pkg.org/badges/grand-total/germinationmetrics?color=green)](https://CRAN.R-project.org/package=germinationmetrics)
 <!-- [![packageversion](https://img.shields.io/badge/Package%20version-0.2.3.3-orange.svg)](https://github.com/aravind-j/germinationmetrics) -->
-[![develVersion](https://img.shields.io/badge/devel%20version-0.1.3.9000-orange.svg)](https://github.com/aravind-j/germinationmetrics)
+[![develVersion](https://img.shields.io/badge/devel%20version-0.1.4-orange.svg)](https://github.com/aravind-j/germinationmetrics)
 <!-- [![GitHub Download Count](https://github-basic-badges.herokuapp.com/downloads/aravind-j/germinationmetrics/total.svg)] -->
 [![Project Status:
 Active](http://www.repostatus.org/badges/latest/active.svg)](http://www.repostatus.org/#active)
 [![lifecycle](https://img.shields.io/badge/lifecycle-stable-brightgreen.svg)](https://www.tidyverse.org/lifecycle/#stable)
-[![Last-changedate](https://img.shields.io/badge/last%20change-2020--06--15-yellowgreen.svg)](https://github.com/aravind-j/germinationmetrics/commits/master)
+[![Last-changedate](https://img.shields.io/badge/last%20change-2020--06--16-yellowgreen.svg)](https://github.com/aravind-j/germinationmetrics/commits/master)
 [![Rdoc](http://www.rdocumentation.org/badges/version/germinationmetrics)](http://www.rdocumentation.org/packages/germinationmetrics)
 [![Zenodo
 DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.1219630.svg)](https://doi.org/10.5281/zenodo.1219630)
@@ -98,8 +98,8 @@ citation("germinationmetrics")
 
 To cite the R package 'germinationmetrics' in publications use:
 
-  Aravind, J., Vimala Devi, S., Radhamani, J., Jacob, S. R., and Kalyani Srinivasan (2020).  germinationmetrics:
-  Seed Germination Indices and Curve Fitting. R package version 0.1.4,
+  Aravind, J., Vimala Devi, S., Radhamani, J., Jacob, S. R., and Kalyani Srinivasan (2020).  germinationmetrics: Seed
+  Germination Indices and Curve Fitting. R package version 0.1.4,
   https://github.com/aravind-j/germinationmetricshttps://cran.r-project.org/package=germinationmetrics.
 
 A BibTeX entry for LaTeX users is
@@ -113,6 +113,6 @@ A BibTeX entry for LaTeX users is
     note = {https://cran.r-project.org/package=germinationmetrics},
   }
 
-This free and open-source software implements academic research by the authors and co-workers. If you use it, please
-support the project by citing the package.
+This free and open-source software implements academic research by the authors and co-workers. If you use it, please support
+the project by citing the package.
 ```