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read_vpts() #590

Merged
merged 159 commits into from
Jul 7, 2023
Merged

read_vpts() #590

merged 159 commits into from
Jul 7, 2023

Commits on May 17, 2023

  1. Rename original read_vpts() to read_stdout()

    @peterdesmet
    peterdesmet committed May 17, 2023
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  2. Start new read_vpts function

    @peterdesmet
    peterdesmet committed May 17, 2023
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Commits on May 29, 2023

  1. Start tests

    @peterdesmet
    peterdesmet committed May 29, 2023
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  2. Support 2 files formats

    @peterdesmet
    peterdesmet committed May 29, 2023
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  3. Document

    @peterdesmet
    peterdesmet committed May 29, 2023
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  4. Merge branch 'master' into read_vpts

    @peterdesmet
    peterdesmet committed May 29, 2023
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  5. Use markdown for read_stdout()

    @peterdesmet
    peterdesmet committed May 29, 2023
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  6. Document

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Commits on May 30, 2023

  1. Merge branch 'master' into read_vpts

    @iskandari
    iskandari committed May 30, 2023
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  2. prepend assert_that

    @iskandari
    iskandari committed May 30, 2023
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  3. prepended functions

    @iskandari
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  4. prepended functions

    @iskandari
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  5. added uniform file extension test

    @iskandari
    iskandari committed May 30, 2023
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  6. add check that all input files exist

    @iskandari
    iskandari committed May 30, 2023
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Commits on May 31, 2023

  1. added test that files input to function exist

    @iskandari
    iskandari committed May 31, 2023
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  2. fixed assertthat typo

    @iskandari
    iskandari committed May 31, 2023
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  3. remove assertion that all files exist because URLs are not within the… 

    … scope of this function
    @iskandari
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  4. added remote hdf5 to read_vpts test

    @iskandari
    iskandari committed May 31, 2023
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  5. switched out httr for curl

    @iskandari
    iskandari committed May 31, 2023
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  6. define tempfile

    @iskandari
    iskandari committed May 31, 2023
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  7. fix typo

    @iskandari
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  8. remove multiple temp files

    @iskandari
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  9. fix typo

    @iskandari
    iskandari committed May 31, 2023
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  10. check results$datetime for number of vp objects

    @iskandari
    iskandari committed May 31, 2023
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  11. remove print statements

    @iskandari
    iskandari committed May 31, 2023
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  12. added keywords internal to read_stdout

    @iskandari
    iskandari committed May 31, 2023
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  13. modified namespace and added read_stdout to man files

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Commits on Jun 2, 2023

  1. added deprecation rerouting for read_vpts() to read_stdout() with .De… 

    …precated
    @iskandari
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  2. added deprecation rerouting for read_vpts() to read_stdout() with .De… 

    …precated
    @iskandari
    iskandari committed Jun 2, 2023
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  3. test example vpts file with rerouting to stdout

    @iskandari
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  4. test example vpts file with rerouting to stdout

    @iskandari
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  5. test example vpts file with rerouting to stdout

    @iskandari
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  6. add deprecated parameters to documentation for now

    @iskandari
    iskandari committed Jun 2, 2023
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  7. rebuilt docs for read_vpts

    @iskandari
    iskandari committed Jun 2, 2023
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  8. add test for multiple radars in vp hdf5 files

    @iskandari
    iskandari committed Jun 2, 2023
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  9. add test for multiple radars in vp hdf5 files

    @iskandari
    iskandari committed Jun 2, 2023
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Commits on Jun 3, 2023

  1. all tests passing with one exception

    @iskandari
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  2. all tests passing with one exception

    @iskandari
    iskandari committed Jun 3, 2023
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  3. all tests pass with one exception

    @iskandari
    iskandari committed Jun 3, 2023
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  4. added helper script and modified test-read_vpts accordingly

    @iskandari
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  5. avoid checking system files and use relative paths for temp directories

    @iskandari
    iskandari committed Jun 3, 2023
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Commits on Jun 5, 2023

  1. added importFrom statement in utils.R

    @iskandari
    iskandari committed Jun 5, 2023
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  2. updated documentation

    @iskandari
    iskandari committed Jun 5, 2023
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Commits on Jun 6, 2023

  1. bump version number: development

    @PietrH
    PietrH authored Jun 6, 2023
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  2. parse both NA and NaN (fix #40)

    @adokter
    adokter committed Jun 6, 2023
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  3. Verbosely declare utils::read.csv()

    @peterdesmet
    peterdesmet committed Jun 6, 2023
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  4. Use styler

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Commits on Jun 7, 2023

  1. modified read_vpts() to check for .txt as opposed to old input parame… 

    …ters
    @iskandari
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  2. expect warning with txt and correct parameters to stdout, otherise ex… 

    …pect error
    @iskandari
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  3. pass additional arguments ... to stdout()

    @iskandari
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  4. suppress warnings so that test can pass

    @iskandari
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  5. because both warning and error occur, use expect condition

    @iskandari
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  6. reran docs for read_vpts

    @iskandari
    iskandari committed Jun 7, 2023
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  7. convert radar to char

    @iskandari
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Commits on Jun 8, 2023

  1. Rename parameter data_frame to df 

    And internal df to data
    @peterdesmet
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  2. Merge branch 'master' into read_vpts

    @peterdesmet
    peterdesmet authored Jun 8, 2023
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  3. Create test-read_stdout.R 

    Adapted from 2c6dce5

Co-Authored-By: Pieter Huybrechts <[email protected]>
    @peterdesmet @PietrH
    peterdesmet and PietrH committed Jun 8, 2023
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Commits on Jun 9, 2023

  1. move radar assertation to top, use assertthat::assert_that for error … 

    …messaging
    @PietrH
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  2. change error expectations, add radar argument to tests

    @PietrH
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  3. add wavelength assertions

    @PietrH
    PietrH committed Jun 9, 2023
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  4. suppress warning from test output

    @PietrH
    PietrH committed Jun 9, 2023
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  5. fail on delimiter early

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  6. avoid warning from test output

    @PietrH
    PietrH committed Jun 9, 2023
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  7. fix spelling error

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    PietrH committed Jun 9, 2023
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  8. Merge branch 'master' into test_read_stdout

    @PietrH
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  9. Merge pull request #601 from adokter/test_read_stdout 

    Re-enable tests for read_stdout()
    @peterdesmet
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  10. added suntools to remotes and depends

    @iskandari
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  11. removed maptools from depends

    @iskandari
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  12. rebuilt codemeta and removed maptools from all docs

    @iskandari
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  13. increment version

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  14. increment version

    @iskandari
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  15. separate remoted with comma

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  16. Merge branch 'read_vpts' of github.com:adokter/bioRad into read_vpts

    @iskandari
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  17. Resolved merge conflict in DESCRIPTION

    @iskandari
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  18. added timesteps in read_vpts_csv

    @iskandari
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  19. added guess_file_type to helper script

    @iskandari
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  20. changed baltrad urls

    @iskandari
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  21. changed baltrad urls

    @iskandari
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  22. added check for file type if extension not found

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  23. assume comma on every line or csv assumption

    @iskandari
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  24. added remaining attributes to data.frmae

    @iskandari
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  25. move test script variables out of helper function script

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  26. move test script variables out of helper function script

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  27. added guess_file_type to utils

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  28. added guess_file_type rd file

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Commits on Jun 13, 2023

  1. rename vptsfile to stdout_file

    @adokter
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  2. add example prototypes for read_vpts

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Commits on Jun 14, 2023

  1. removed deprecation warning and pass only named arguments to read_stdout

    iskandari authored and iskandari committed Jun 14, 2023
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Commits on Jun 16, 2023

  1. removed internal functions from docs; added tibble_to_mat to utils

    @iskandari
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  2. added df_to_mat_list helper function

    @iskandari
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  3. style code

    @iskandari
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  4. style utils

    @iskandari
    iskandari committed Jun 16, 2023
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  5. Convert ISO 8601 to posixct in mutation

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Commits on Jun 21, 2023

  1. fixed tests to compare vpts output of h5 and csv files from 3 days

    @iskandari
    iskandari committed Jun 21, 2023
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  2. correct comment for expect_equal

    @iskandari
    iskandari committed Jun 21, 2023
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  3. avoid notes for non-standard evaluation

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Commits on Jun 22, 2023

  1. formatted test-read_vpts.R

    @iskandari
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  2. added example vpts.csv file in extdata

    @iskandari
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  3. added stdout format to read_vpts documentation

    @iskandari
    iskandari committed Jun 22, 2023
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  4. rebuild documentation

    @iskandari
    iskandari committed Jun 22, 2023
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  5. fixed startup message

    @iskandari
    iskandari committed Jun 22, 2023
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Commits on Jun 23, 2023

  1. Add .vscode to .gitignore

    @iskandari
    iskandari committed Jun 23, 2023
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  2. modify missing values in frictionless package schema

    @iskandari
    iskandari committed Jun 23, 2023
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  3. Merge branch 'read_vpts' of github.com:adokter/bioRad into read_vpts

    @iskandari
    iskandari committed Jun 23, 2023
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  4. reverted gitignore

    @iskandari
    iskandari committed Jun 23, 2023
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Commits on Jun 26, 2023

  1. fixed missing link in read_vpts roxygen docs

    @iskandari
    iskandari committed Jun 26, 2023
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  2. updated guess file type documentation

    @iskandari
    iskandari committed Jun 26, 2023
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  3. explicitly specify .csv extension in calculate_vp()

    @iskandari
    iskandari committed Jun 26, 2023
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  4. write csv with vol2birdR and use read_vpts in calculate_vp when csv e… 

    …xtension is explicit
    @iskandari
    iskandari committed Jun 26, 2023
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  5. added test that checks calcluate_vp() output matches input vpfile ext… 

    …ension; inherits vpts
    @iskandari
    iskandari committed Jun 26, 2023
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  6. regenerated man file for calculate_vp

    @iskandari
    iskandari committed Jun 26, 2023
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  7. read in frictionless schema with jsonlite and modify

    @iskandari
    iskandari committed Jun 26, 2023
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  8. check for mismatch between explicit file extension and guessed_file_e… 

    …xtension
    @iskandari
    iskandari committed Jun 26, 2023
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  9. fixed examples in documentation for read_vpts

    @iskandari
    iskandari committed Jun 26, 2023
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  10. fixed example line and moved sf to suggests

    @iskandari
    iskandari committed Jun 26, 2023
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  11. regenerated documnetation for read_vpts

    @iskandari
    iskandari committed Jun 26, 2023
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Commits on Jun 27, 2023

  1. remove evolution status change and messaging in pakcage startup as it… 

    … has become default
    @iskandari
    iskandari committed Jun 27, 2023
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Commits on Jun 28, 2023

  1. remove require aws message in tests

    @iskandari
    iskandari committed Jun 28, 2023
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  2. convert vpts to vp in calculate vp

    @iskandari
    iskandari committed Jun 28, 2023
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  3. calculate_vp test should always expect output of vp class

    @iskandari
    iskandari committed Jun 28, 2023
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  4. replace temp directory with tempdir()

    @iskandari
    iskandari committed Jun 28, 2023
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  5. reduced size of example_vpts.csv

    @iskandari
    iskandari committed Jun 28, 2023
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  6. remove unlink tempfile

    @iskandari
    iskandari committed Jun 28, 2023
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Commits on Jul 5, 2023

  1. abstracted and exported as.vpts from read_vpts_csv

    Alexander Tedeschi committed Jul 5, 2023
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  2. generated docs for as.vpts and added vpts to extdata

    @iskandari
    iskandari committed Jul 5, 2023
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Commits on Jul 6, 2023

  1. added tests for as vpts; fixed small errors and regenerated docs

    @iskandari
    iskandari committed Jul 6, 2023
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  2. added test for as.vpts

    @iskandari
    iskandari committed Jul 6, 2023
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  3. remove introduced stray spaces

    @adokter
    adokter committed Jul 6, 2023
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  4. remove github suntools remote

    @adokter
    adokter committed Jul 6, 2023
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  5. added extra documentation

    @iskandari
    iskandari committed Jul 6, 2023
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  6. added extra documentation

    @iskandari
    iskandari committed Jul 6, 2023
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  7. Merge branch 'read_vpts' of github.com:adokter/bioRad into read_vpts

    @iskandari
    iskandari committed Jul 6, 2023
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  8. moved as.vpts() to its own R script

    @iskandari
    iskandari committed Jul 6, 2023
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  9. moved as.vpts() to its own R script

    @iskandari
    iskandari committed Jul 6, 2023
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Commits on Jul 7, 2023

  1. update news, add comments to as.vpts example

    @adokter
    adokter committed Jul 7, 2023
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  2. separate dplyr mutation of source file only if it exists

    @iskandari
    iskandari committed Jul 7, 2023
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  3. add test for multiple h5 radar warning

    @iskandari
    iskandari committed Jul 7, 2023
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  4. fix messaging for .txt stdout files

    @iskandari
    iskandari committed Jul 7, 2023
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  5. fix #609

    @adokter
    adokter committed Jul 7, 2023
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  6. Merge branch 'read_vpts' of https://github.com/adokter/bioRad into re… 

    …ad_vpts
    @adokter
    adokter committed Jul 7, 2023
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  7. dedupe datetime height in example_vpts.csv

    @iskandari
    iskandari committed Jul 7, 2023
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  8. added test for vpts -> df -> vpts conversion

    @iskandari
    iskandari committed Jul 7, 2023
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  9. compare h5 to csv inputs for 1 day instead of 3

    @iskandari
    iskandari committed Jul 7, 2023
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  10. add warnings, mask rcs and sd_vvp_threshold

    @adokter
    adokter committed Jul 7, 2023
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  11. expose and document data_frame argument

    @adokter
    adokter committed Jul 7, 2023
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  12. rebuild documentation

    @adokter
    adokter committed Jul 7, 2023
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  13. fix test

    @adokter
    adokter committed Jul 7, 2023
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  14. regenerated codemet.json

    @iskandari
    iskandari committed Jul 7, 2023
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  15. Merge branch 'read_vpts' of https://github.com/adokter/bioRad into re… 

    …ad_vpts
    @adokter
    adokter committed Jul 7, 2023
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  16. fix test, restore rcs and sd_vvp_threshold as data columns

    @adokter
    adokter committed Jul 7, 2023
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  17. add rcs and sd_vvp_threshold as columns in as.data.frame.vpts

    @adokter
    adokter committed Jul 7, 2023
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  18. Merge branch 'read_vpts' of https://github.com/adokter/bioRad into re… 

    …ad_vpts
    @adokter
    adokter committed Jul 7, 2023
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  19. repalce expect equivalent with expect equal

    @iskandari
    iskandari committed Jul 7, 2023
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  20. fix test for added rcs and sd_vvp_threshold parameters

    @adokter
    adokter committed Jul 7, 2023
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  21. update authorship

    @adokter
    adokter committed Jul 7, 2023
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  22. Merge branch 'read_vpts' of github.com:adokter/bioRad into read_vpts

    @iskandari
    iskandari committed Jul 7, 2023
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  23. Revert "repalce expect equivalent with expect equal" 

    This reverts commit a9c42a7.
    @iskandari
    iskandari committed Jul 7, 2023
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  24. Revert "Merge branch 'read_vpts' of https://github.com/adokter/bioRad … 

    …into read_vpts"

This reverts commit 565a786, reversing
changes made to 2b29cc9.
    @iskandari
    iskandari committed Jul 7, 2023
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  25. updated docs and codemeta json

    @iskandari
    iskandari committed Jul 7, 2023
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