Merge pull request #41 from gnu-octave/master

[pull] master from gnu-octave:master
acpennlab · May 13, 2024 · b426d33 · b426d33
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diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,6 +1,6 @@
 name: statistics-resampling
-version: 5.5.10
-date: 2024-04-27
+version: 5.5.11
+date: 2024-05-13
 author: Andrew Penn <[email protected]>
 maintainer: Andrew Penn <[email protected]>
 title: A statistics package with a variety of resampling tools

diff --git a/docs/copying.html b/docs/copying.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/description.json b/docs/description.json
@@ -1,14 +1,14 @@
 {
   "generator": "generate_html",
   "generator_version": "0.3.3",
-  "date_generated": "2024-05-07",
+  "date_generated": "2024-05-13",
   "package": 
   {
     "name": "statistics-resampling",
-    "version": "5.5.10",
+    "version": "5.5.11",
     "description": "The statistics-resampling package is an Octave  package and Matlab toolbox that can be used to perform a wide  variety of statistics tasks using non-parametric resampling  methods. In particular, the functions included can be used to  estimate bias, uncertainty (standard errors and confidence  intervals), prediction error, and calculate p-values for null  hypothesis significance tests. Variations of the resampling  methods are included that improve the accuracy of the  statistics for small samples and samples with complex  dependence structures.",
     "shortdescription": "The statistics-resampling package is an Octave  package and Matlab toolbox that can be used to perform a wide  variety of statistics tasks using non-parametric resampling  methods",
-    "date": "2024-04-27",
+    "date": "2024-05-13",
     "title": "A statistics package with a variety of resampling tools",
     "author": "Andrew Penn <[email protected]>",
     "maintainer": "Andrew Penn <[email protected]>",

diff --git a/docs/function/boot.html b/docs/function/boot.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -118,15 +118,15 @@ <h3><a name="1">Demonstration 1</a></h3>
 
  Columns 1 through 13:
 
-            1            2            1            1            3            3            3            2            1            3            1            2            3
-            2            1            3            1            3            2            3            3            3            2            3            2            2
-            2            2            1            2            2            2            2            1            1            3            1            3            1
+            2            3            3            2            2            2            1            1            3            1            3            3            2
+            3            1            3            1            2            3            2            2            2            1            2            1            2
+            2            1            3            3            2            1            2            3            1            2            1            2            3
 
  Columns 14 through 20:
 
-            2            1            3            2            3            1            2
-            2            2            1            3            1            1            2
-            1            3            1            3            3            3            1</pre>
+            1            2            2            3            3            1            1
+            2            3            3            1            1            3            3
+            1            1            1            2            3            3            1</pre>
 </div>
 
 <h3><a name="2">Demonstration 2</a></h3>
@@ -141,15 +141,15 @@ <h3><a name="2">Demonstration 2</a></h3>
 
  Columns 1 through 13:
 
-            2            3            2            3            3            1            2            1            1            2            3            2            3
-            3            3            2            3            3            2            2            1            1            2            1            2            2
-            2            3            1            2            3            2            3            1            1            3            3            2            3
+            2            3            2            2            3            1            3            1            2            2            1            2            2
+            2            1            1            2            3            2            2            1            1            3            3            1            3
+            3            3            1            2            3            1            3            1            2            2            3            2            3
 
  Columns 14 through 20:
 
-            3            2            2            1            1            1            3
-            1            1            3            1            2            2            3
-            1            1            2            1            1            1            3</pre>
+            3            1            2            1            2            3            3
+            3            1            2            1            1            1            2
+            1            1            3            3            1            3            2</pre>
 </div>
 
 <h3><a name="3">Demonstration 3</a></h3>

diff --git a/docs/function/boot1way.html b/docs/function/boot1way.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -529,7 +529,7 @@ <h3><a name="7">Demonstration 7</a></h3>
 -----------------------------------------------------------------------------
 | Comparison |     Test # |      Ref # | Difference |          t |        p |
 |------------|------------|------------|------------|------------|----------|
-|          1 |          2 |          1 |    -0.1147 |      -0.26 |     .760 |
+|          1 |          2 |          1 |    -0.3684 |      -0.63 |     .564 |
 
 -----------------------------------------------------------------------------
 |    GROUP # |                                       GROUP label |        N |
@@ -574,7 +574,7 @@ <h3><a name="8">Demonstration 8</a></h3>
 -----------------------------------------------------------------------------
 | Comparison |     Test # |      Ref # | Difference |          t |        p |
 |------------|------------|------------|------------|------------|----------|
-|          1 |          2 |          1 |     +1.340 |      +2.51 |     .019 |*
+|          1 |          2 |          1 |    +0.3039 |      +0.44 |     .600 |
 
 -----------------------------------------------------------------------------
 |    GROUP # |                                       GROUP label |        N |

diff --git a/docs/function/bootbayes.html b/docs/function/bootbayes.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -191,7 +191,7 @@ <h3><a name="1">Demonstration 1</a></h3>
 
 Posterior Statistics: 
  original     bias         median       stdev       CI_lower      CI_upper
- +184.5       +0.04987     +184.5       1.286       +182.1        +187.1</pre>
+ +184.5       +0.01529     +184.5       1.351       +181.7        +187.2</pre>
 </div>
 
 <h3><a name="2">Demonstration 2</a></h3>
@@ -228,8 +228,8 @@ <h3><a name="2">Demonstration 2</a></h3>
 
 Posterior Statistics: 
  original     bias         median       stdev       CI_lower      CI_upper
- +175.5       -0.1213      +175.3       2.401       +171.0        +180.2    
- +0.1904      +0.003674    +0.1961      0.07964     +0.03563      +0.3449</pre>
+ +175.5       -0.07775     +175.4       2.287       +171.1        +179.9    
+ +0.1904      +0.002169    +0.1929      0.07622     +0.03454      +0.3340</pre>
 </div>
 
 <p>Package: <a href="../index.html">statistics-resampling</a></p>

diff --git a/docs/function/bootcdf.html b/docs/function/bootcdf.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />

diff --git a/docs/function/bootci.html b/docs/function/bootci.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -269,8 +269,8 @@ <h3><a name="5">Demonstration 5</a></h3>
 <p>Produces the following output</p>
 <pre class="example">ci =
 
-       114.34
-       257.98</pre>
+       114.49
+       258.48</pre>
 </div>
 
 <h3><a name="6">Demonstration 6</a></h3>
@@ -333,8 +333,8 @@ <h3><a name="8">Demonstration 8</a></h3>
 <p>Produces the following output</p>
 <pre class="example">ci =
 
-      0.50486
-       0.8608</pre>
+      0.50615
+      0.86244</pre>
 </div>
 
 <h3><a name="9">Demonstration 9</a></h3>
@@ -441,13 +441,13 @@ <h3><a name="9">Demonstration 9</a></h3>
 <p>Produces the following output</p>
 <pre class="example">ans =
 
-       -16.69      -20.563       -12.28
-      -11.721      -15.162      -7.7424
-      -8.0606       -11.43       -4.392
-      0.10476    -0.079726      0.28251
-     0.010336    -0.002213     0.023716
-      0.06452     0.032564     0.095997
-    0.0016638   0.00011273    0.0030787</pre>
+       -16.69      -20.554      -12.276
+      -11.721      -15.155      -7.7419
+      -8.0606      -11.428      -4.3915
+      0.10476    -0.079726      0.28245
+     0.010336   -0.0022151     0.023716
+      0.06452     0.032552      0.09599
+    0.0016638   0.00011268    0.0030786</pre>
 </div>
 
 <h3><a name="10">Demonstration 10</a></h3>
@@ -468,8 +468,8 @@ <h3><a name="10">Demonstration 10</a></h3>
 <p>Produces the following output</p>
 <pre class="example">ci =
 
-     -0.61473     -0.41387
-      0.57767        0.869</pre>
+     -0.13896     -0.72921
+       0.7127      0.31607</pre>
 </div>
 
 <h3><a name="11">Demonstration 11</a></h3>
@@ -595,9 +595,9 @@ <h3><a name="11">Demonstration 11</a></h3>
  % normal               |    81.5% |   3.0% |  15.5% |   0.77 |  1.21 |
  % percentile           |    81.5% |   0.9% |  17.6% |   0.76 |  0.91 |
  % basic                |    81.1% |   2.5% |  16.4% |   0.78 |  1.09 |
- % BCa                  |    84.2% |   5.4% |  10.4% |   0.86 |  1.82 |
+ % BCa                  |    83.9% |   5.2% |  10.9% |   0.83 |  1.84 |
  % bootstrap-t          |    89.2% |   4.3% |   6.5% |   0.99 |  2.15 |
- % calibrated           |    87.4% |   4.2% |   8.4% |   0.91 |  2.03 |
+ % calibrated           |    88.9% |   3.7% |   7.4% |   0.89 |  2.04 |
  % ---------------------|----------|--------|--------|--------|-------|
  % parametric - exact   |    90.8% |   3.7% |   5.5% |   0.99 |  2.52 |</pre>
 <p>gives an example of how 'bootci' is used.</p>

diff --git a/docs/function/bootclust.html b/docs/function/bootclust.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />
@@ -223,7 +223,7 @@ <h3><a name="2">Demonstration 2</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +29.65       -0.02581     +2.950       +22.83       +36.03</pre>
+ +29.65       -0.02581     +2.950       +22.84       +36.04</pre>
 </div>
 
 <h3><a name="3">Demonstration 3</a></h3>
@@ -312,11 +312,11 @@ <h3><a name="5">Demonstration 5</a></h3>
  Number of resamples: 1999 
  Number of data rows in each block: 1 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 90% (11.6%, 98.6%)
+ Nominal coverage (and the percentiles used): 90% (11.7%, 98.6%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -6.634       +42.13       +113.9       +258.2</pre>
+ +171.5       -6.634       +42.13       +114.1       +258.7</pre>
 </div>
 
 <h3><a name="6">Demonstration 6</a></h3>
@@ -343,11 +343,11 @@ <h3><a name="6">Demonstration 6</a></h3>
  Resampling method: Balanced, cluster bootstrap resampling 
  Number of resamples: 1999 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 90% (14.7%, 99.0%)
+ Nominal coverage (and the percentiles used): 90% (15.1%, 99.1%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +171.5       -10.30       +34.38       +124.4       +234.5</pre>
+ +171.5       -10.30       +34.38       +125.0       +235.8</pre>
 </div>
 
 <h3><a name="7">Demonstration 7</a></h3>
@@ -376,8 +376,8 @@ <h3><a name="7">Demonstration 7</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.1347      -0.0002717   +0.2395      -0.2643      +0.5321    
- -0.02530     -0.01070     +0.1898      -0.3179      +0.2850</pre>
+ +0.3052      -0.01557     +0.2059      -0.007480    +0.6725    
+ -0.1663      +0.02261     +0.1710      -0.4057      +0.1247</pre>
 </div>
 
 <h3><a name="8">Demonstration 8</a></h3>
@@ -406,8 +406,8 @@ <h3><a name="8">Demonstration 8</a></h3>
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.2430      +0.006715    +0.3419      -0.2821      +0.8430    
- +0.6460      -0.05234     +0.2541      +0.3552      +1.233</pre>
+ +0.1401      +0.006113    +0.2929      -0.4786      +0.5297    
+ +0.04985     +0.009865    +0.1333      -0.1655      +0.2615</pre>
 </div>
 
 <h3><a name="9">Demonstration 9</a></h3>
@@ -434,11 +434,11 @@ <h3><a name="9">Demonstration 9</a></h3>
  Resampling method: Balanced, cluster bootstrap resampling 
  Number of resamples: 1999 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 95% (1.9%, 96.9%)
+ Nominal coverage (and the percentiles used): 95% (2.8%, 97.8%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.7764      -0.02442     +0.1446      +0.3970      +0.9968</pre>
+ +0.7764      -0.02442     +0.1446      +0.4355      +1.014</pre>
 </div>
 
 <h3><a name="10">Demonstration 10</a></h3>
@@ -481,11 +481,11 @@ <h3><a name="10">Demonstration 10</a></h3>
  Number of resamples: 1999 
  Number of data rows in each block: 3 
  Confidence interval (CI) type: Bias-corrected and accelerated (BCa) 
- Nominal coverage (and the percentiles used): 95% (73.4%, 100.0%)
+ Nominal coverage (and the percentiles used): 95% (73.8%, 100.0%)
 
 Bootstrap Statistics: 
  original     bias         std_error    CI_lower     CI_upper  
- +0.5858      -0.1686      +0.1319      +0.5009      +0.8686</pre>
+ +0.5858      -0.1686      +0.1319      +0.5024      +0.8876</pre>
 </div>
 
 <p>Package: <a href="../index.html">statistics-resampling</a></p>

diff --git a/docs/function/bootint.html b/docs/function/bootint.html
@@ -3,7 +3,7 @@
 <html xmlns="http://www.w3.org/1999/xhtml" lang="en" xml:lang="en">
   <head>
   <meta http-equiv="content-type" content="text/html; charset=utf-8" />
-  <meta name="date" content="2024-05-07"/>
+  <meta name="date" content="2024-05-13"/>
   <meta name="generator" content="generate_html 0.3.3" />
   <meta name="author" content="Andrew Penn" />
   <meta name="description" content="A package for statistical analysis using resampling methods." />