Merge pull request #2 from AllanSSX/master

Adding a script to fuse upstream and downstream profiles

fuseProfiles.py

@@ -0,0 +1,45 @@
+#!/usr/bin/env python
+# -*- coding: utf-8 -*-
+
+#================================================================#
+
+import argparse
+
+#================================================================#
+
+def getArgs():
+    parser = argparse.ArgumentParser(description="",version="1.0.0")
+    parser.add_argument('-u',dest="up",type=argparse.FileType('r'),required=True,help='upstream csv file')
+    parser.add_argument('-d',dest="down",type=argparse.FileType('r'),required=True,help='downstream csv file')
+
+    args = parser.parse_args()
+
+    return args
+
+def splitcsv(csv):
+    csvdict = {}
+
+    for line in csv:
+        elem = line.split(',')
+        id = elem[0]
+        pos = elem[1:-1]
+        csvdict[id] = pos
+
+    return csvdict
+
+def main(args):
+    up = splitcsv(args.up)
+    down = splitcsv(args.down)
+
+    for sample in sorted(up.keys()):
+
+        upPos = up[sample]
+        upPos.reverse()
+        downPos = down[sample]
+        profiles = [sample] + upPos[:-1] + downPos
+
+        print ','.join(profiles)
+
+if __name__ == '__main__':
+    args = getArgs()
+    main(args)