State level initial

.github/workflows/test_fredi.yml

@@ -61,7 +61,7 @@ jobs:
           Rscript -e '
             devtools::install_github(
               repo    = "https://github.com/USEPA/FrEDI",
-              ref     = "main",
+              ref     = "${{ github.ref_name }}",
               subdir  = "FrEDI",
               dependencies = FALSE,
               upgrade = "never",
@@ -94,6 +94,11 @@ jobs:
 
           ### Test results
           if(do_tests){
+
+            ### Check if path exists and, if not, create it
+            exists0 <- oPath1 |> dir.exists()
+            if(!exists0){oPath1 |> dir.create(recursive = TRUE)}
+
             ### Run FrEDI
             results0 <- run_fredi()
             ### Run tests
@@ -119,7 +124,8 @@ jobs:
 
             ### Check if path exists and, if not, create it
             exists0 <- oPath2 |> dir.exists()
-            if(!exists0){oPath2 |> dir.create()}
+            if(!exists0){oPath2 |> dir.create(recursive = TRUE)}
+
 
             ### Create report figures
             reports0 <- create_DoW_results(

.github/workflows/update_base_data.yml

@@ -0,0 +1,28 @@
+name: Update Base System Data
+
+on:
+  workflow_dispatch:
+    inputs:
+      fredi_data_branches:
+        type: string
+        description: Which data only branch of FrEDI_data to pull in data from? (i.e. data_only_branch_state_initial)
+
+
+jobs:
+  get_data:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - name: Commit results
+        run: |
+          git config --global user.email "[email protected]"
+          git config --global user.name "GitHub Actions"
+          git pull --depth=1 --ff https://github.com/USEPA/FrEDI_Data.git ${{ github.event.inputs.fredi_data_branches }} --allow-unrelated-histories
+          mv data/tmp_sysdata.rda FrEDI/R/sysdata.rda
+          git branch --show-current
+          git add FrEDI/R/sysdata.rda
+          git rm -r data
+          git pull origin ${{ github.head_ref }} --autostash --rebase -X ours
+          git status
+          git commit -am "add new sysdata.rda from ${{ github.event.inputs.fredi_data_branches }}"
+          git push

FrEDI/DESCRIPTION

@@ -41,6 +41,6 @@ Depends: R (>= 3.5.0),
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.2.3
 LazyData: TRUE
-Suggests: knitr, rmarkdown, prettydoc, devtools
+Suggests: knitr, rmarkdown, prettydoc, devtools, kableExtra
 VignetteBuilder: knitr
 Language: en-US