3.13.20240319

Minor release with some construction "under the hood"

• updated pangolin to 4.3.1-pdata-1.26
• updated freyja to 1.4.9-03_18_2024-00-45-2024-03-19
• moved aci to staphb/aci:1.4.20240116
• lists all versions for all processes
  • includes software versions in multiqc
• compresses classified and unclassified kraken2 reads in fastq.gz files (instead of fastq)
• run report files have been renamed to start with "cecret"
• allows multiple sequence alignment file from nextclade to be used with iqtree2 for phylogenetic tree creation

"Under the hood" changes

• adds GA for kraken2
• adds task.ext.prefix, etc for each process (still needs the meta.id)