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3.11.20240116
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@erinyoung erinyoung released this 17 Jan 22:00
· 309 commits to master since this release
3.11.20240116
4fb0fd9
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GPG key ID: B5690EEEBB952194
Learn about vigilant mode.

Moderate update:

  • update nextclade to version 3.0.0
    • remove nextalign multiple sequence alignment option - well, replaced it with nextclade, but all nodes are included
  • update included SARS-CoV-2 nextclade dataset (use by setting params.download_nextclade_dataset = false)
  • separate aci to run per sample instead of per run
  • update samtools and bcftools to 1.19
  • update aci to 1.4.20240116
  • update freyja to 1.4.8-2024-01-16
  • update vadr to 1.6.3
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