Merge pull request #292 from UPHL-BioNGS/update-20240206

Update 20240206
UPHL-BioNGS · Feb 6, 2024 · e2eaa4b · e2eaa4b
2 parents 2080cb0 + e2a076a
commit e2eaa4b
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Showing 4 changed files with 8 additions and 8 deletions.
diff --git a/modules/freyja.nf b/modules/freyja.nf
@@ -3,7 +3,7 @@ process freyja_variants {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'quay.io/uphl/freyja:1.4.8-2024-01-30'
+  container     'quay.io/uphl/freyja:1.4.8-2024-02-06'
 
 
   //#UPHLICA maxForks 10
@@ -45,7 +45,7 @@ process freyja_demix {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'quay.io/uphl/freyja:1.4.8-2024-01-30'
+  container     'quay.io/uphl/freyja:1.4.8-2024-02-06'
 
 
   //#UPHLICA maxForks 10
@@ -87,7 +87,7 @@ process freyja_boot {
   label         "process_medium"
   //errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
   publishDir    "${params.outdir}", mode: 'copy'
-  container     'quay.io/uphl/freyja:1.4.8-2024-01-30'
+  container     'quay.io/uphl/freyja:1.4.8-2024-02-06'
 
   //#UPHLICA maxForks 10
   //#UPHLICA pod annotation: 'scheduler.illumina.com/presetSize', value: 'standard-xlarge'
@@ -126,7 +126,7 @@ process freyja_aggregate {
   tag        "Aggregating results from freyja"
   label      "process_single"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'quay.io/uphl/freyja:1.4.8-2024-01-30'
+  container  'quay.io/uphl/freyja:1.4.8-2024-02-06'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/modules/iqtree2.nf b/modules/iqtree2.nf
@@ -2,7 +2,7 @@ process iqtree2 {
   tag        "Creating phylogenetic tree with iqtree"
   label      "process_high"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'staphb/iqtree2:2.2.2.6'
+  container  'staphb/iqtree2:2.2.2.7'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/modules/nextclade.nf b/modules/nextclade.nf
@@ -2,7 +2,7 @@ process nextclade_dataset {
   tag        "Downloading NextClade Dataset"
   label      "process_medium"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'nextstrain/nextclade:3.0.1'
+  container  'nextstrain/nextclade:3.1.0'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}
@@ -38,7 +38,7 @@ process nextclade {
   tag        "Clade Determination"
   label      "process_medium"
   publishDir "${params.outdir}", mode: 'copy'
-  container  'nextstrain/nextclade:3.0.1'
+  container  'nextstrain/nextclade:3.1.0'
 
   //#UPHLICA maxForks 10
   //#UPHLICA errorStrategy { task.attempt < 2 ? 'retry' : 'ignore'}

diff --git a/nextflow.config b/nextflow.config
@@ -5,7 +5,7 @@ manifest {
   name              = 'Cecret'
   author            = 'Erin Young'
   homePage          = 'https://github.com/UPHL-BioNGS/Cecret'
-  version           = 'v3.11.20240130'
+  version           = 'v3.11.20240206'
   defaultBranch     = 'master'
   recurseSubmodules = false
   description       = 'Reference-based consensus creation'