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Analysis of expanding HCW by cadre #1415

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Analysis of expanding HCW by cadre #1415

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Commits on Jul 5, 2024

  1. try to add one scenario of expanding hcw

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    BinglingICL committed Jul 5, 2024
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  2. try to add the scenario script

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  3. todo

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    BinglingICL committed Jul 5, 2024
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Commits on Jul 6, 2024

  1. input scenario data for increasing Clinical and Pharmacy cadres

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  2. input scenario data for increasing Clinical and Pharmacy cadres

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    BinglingICL committed Jul 6, 2024
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  3. update the scenario script

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    BinglingICL committed Jul 6, 2024
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Commits on Jul 7, 2024

  1. recover the 'custom' sheet in the resource file to fix test failure

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    BinglingICL committed Jul 7, 2024
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  2. update the scenario file

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    BinglingICL committed Jul 7, 2024
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  3. update comments

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    BinglingICL committed Jul 7, 2024
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Commits on Jul 10, 2024

  1. update baseline scenario

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    BinglingICL committed Jul 10, 2024
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  2. Reduce the running period to 2010-2030

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    BinglingICL committed Jul 10, 2024
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Commits on Jul 11, 2024

  1. try create scenarios given a budget

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    BinglingICL committed Jul 11, 2024
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Commits on Jul 12, 2024

  1. update the selection of scenarios

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    BinglingICL committed Jul 12, 2024
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  2. rename file

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    BinglingICL committed Jul 12, 2024
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  3. reduce individual increase to 4 options per cadre

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    BinglingICL committed Jul 12, 2024
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  4. reduce individual increase to 3 options per cadre

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    BinglingICL committed Jul 12, 2024
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Commits on Jul 15, 2024

  1. try increasing the individual increase of each cadre into 6 options

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    BinglingICL committed Jul 15, 2024
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  2. update todo

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    BinglingICL committed Jul 15, 2024
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Commits on Jul 16, 2024

  1. try increasing the individual increase of each cadre into 11 options

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    BinglingICL committed Jul 16, 2024
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Commits on Jul 17, 2024

  1. calculate minute salary per cadre per level

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    BinglingICL committed Jul 17, 2024
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  2. create parameters for the HR expansion function

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    BinglingICL committed Jul 17, 2024
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  3. design steps for the HR expansion function

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    BinglingICL committed Jul 17, 2024
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  4. update steps

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    BinglingICL committed Jul 17, 2024
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  5. add todo

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    BinglingICL committed Jul 17, 2024
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Commits on Jul 18, 2024

  1. create hr minute salary data

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    BinglingICL committed Jul 18, 2024
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  2. write the hr expansion function

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    BinglingICL committed Jul 18, 2024
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  3. update the minute salary file

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    BinglingICL committed Jul 18, 2024
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  4. save the minute salary data

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    BinglingICL committed Jul 18, 2024
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Commits on Aug 5, 2024

  1. calculate the current cost distribution of the four cadres

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  2. create the resource file for hr expansion scenarios base on fractions… 

    … of extra budget
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  3. update resource file

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    BinglingICL committed Aug 5, 2024
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  4. update scenario file

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    BinglingICL committed Aug 5, 2024
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  5. todo in test_healthsystem

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    BinglingICL committed Aug 5, 2024
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  6. Merge branch 'refs/heads/master' into bs/expand_hcw 

    # Conflicts:
#	resources/healthsystem/human_resources/scaling_capabilities/ResourceFile_HR_scaling_by_level_and_officer_type.xlsx
#	tests/test_healthsystem.py
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  7. clean the data preparation file

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    BinglingICL committed Aug 5, 2024
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  8. fix checks failure

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    BinglingICL committed Aug 5, 2024
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  9. fix checks failure

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    BinglingICL committed Aug 5, 2024
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  10. fix checks failure

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    BinglingICL committed Aug 5, 2024
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  11. fix checks failure

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    BinglingICL committed Aug 5, 2024
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  12. renaming the scenario file

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    BinglingICL committed Aug 5, 2024
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  13. fix failing tests

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    BinglingICL committed Aug 5, 2024
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Commits on Aug 6, 2024

  1. creat the test of the hr expansion function

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Commits on Aug 12, 2024

  1. calculate scale up factor outside healthsystem module

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    BinglingICL committed Aug 12, 2024
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Commits on Aug 13, 2024

  1. local run that takes 12 hours

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  2. save and read pickle file

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    BinglingICL committed Aug 13, 2024
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  3. create logger for hr scale up factor

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    BinglingICL committed Aug 13, 2024
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  4. Revert "local run that takes 12 hours" 

    This reverts commit 7dfc7f3.
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    BinglingICL committed Aug 13, 2024
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Commits on Aug 14, 2024

  1. update the scenario script

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    BinglingICL committed Aug 14, 2024
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Commits on Aug 16, 2024

  1. a run for only two scenarios

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Commits on Aug 19, 2024

  1. scale to effective capabilities

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    BinglingICL committed Aug 19, 2024
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  2. rename file

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    BinglingICL committed Aug 19, 2024
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  3. rename long run class in scenario file

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    BinglingICL committed Aug 19, 2024
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  4. update test

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    BinglingICL committed Aug 19, 2024
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Commits on Aug 20, 2024

  1. initiate the analysis script - learn from Tim's branch 1414

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    BinglingICL committed Aug 20, 2024
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  2. extract more results

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    BinglingICL committed Aug 20, 2024
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  3. initial plots and todo

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    BinglingICL committed Aug 20, 2024
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  4. change to 10 runs per draw

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    BinglingICL committed Aug 20, 2024
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  5. fix failing checks

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    BinglingICL committed Aug 20, 2024
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Commits on Aug 21, 2024

  1. plot dalys by cause

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    BinglingICL committed Aug 21, 2024
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  2. get comparison results

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    BinglingICL committed Aug 21, 2024
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  3. plot comparison results

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    BinglingICL committed Aug 21, 2024
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Commits on Aug 22, 2024

  1. update logger format of scale up factors

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    BinglingICL committed Aug 22, 2024
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  2. check if scale to effective capabilities = True will change 2019 capa… 

    …bilities
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    BinglingICL committed Aug 22, 2024
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  3. Revert "update logger format of scale up factors" 

    This reverts commit 9a5d6af.
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    BinglingICL committed Aug 22, 2024
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  4. get hr scale up factors

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    BinglingICL committed Aug 22, 2024
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  5. get current hr count by cadre

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    BinglingICL committed Aug 22, 2024
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  6. get hr salary and update scale up factors

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    BinglingICL committed Aug 22, 2024
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  7. get extra staff and extra cost

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    BinglingICL committed Aug 22, 2024
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Commits on Aug 23, 2024

  1. mannual calculation of total cost and total staff counts for each yea… 

    …r and each scenario
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  2. calculate total cost and staff counts by the end of target period

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    BinglingICL committed Aug 23, 2024
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Commits on Aug 27, 2024

  1. Calculate and plot ROI and CE

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    BinglingICL committed Aug 27, 2024
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  2. fix failing checks and plot deaths averted

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    BinglingICL committed Aug 27, 2024
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  3. add todo

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    BinglingICL committed Aug 27, 2024
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  4. prepare scenarios of fractions that reflect current cost distribution… 

    … among two/three/four cadres
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    BinglingICL committed Aug 27, 2024
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  5. instead of save and reload extra budget fractions data, try directly … 

    …import the results from a script
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    BinglingICL committed Aug 27, 2024
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  6. rename file

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  7. update todo list

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    BinglingICL committed Aug 27, 2024
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  8. update todo list

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    BinglingICL committed Aug 27, 2024
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  9. temporarily fix param_names to be consistent with latest scenario run… 

    … output, so that the analysis can run
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  10. delete unnecessary file

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    BinglingICL committed Aug 27, 2024
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  11. fix failed checks

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    BinglingICL committed Aug 27, 2024
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Commits on Aug 28, 2024

  1. name logger elements consistently

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    BinglingICL committed Aug 28, 2024
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  2. update todo

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    BinglingICL committed Aug 28, 2024
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  3. update plot name

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    BinglingICL committed Aug 28, 2024
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  4. update todo

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  5. plot numbers of staff and budget

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Commits on Aug 29, 2024

  1. update todo

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  2. update todo

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  3. update todo

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Commits on Sep 3, 2024

  1. turn up scale to effective capabilities

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Commits on Sep 4, 2024

  1. update the preparation file to also expand all other cadres

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Commits on Sep 5, 2024

  1. update the function to expand officer type

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    BinglingICL committed Sep 5, 2024
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  2. update the logger

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    BinglingICL committed Sep 5, 2024
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  3. update test

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  4. update scenario run settings

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    BinglingICL committed Sep 5, 2024
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  5. change data type to fix json error

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  6. update logger

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    BinglingICL committed Sep 5, 2024
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  7. scale down minute salary when scale up to effective capabilities

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    BinglingICL committed Sep 5, 2024
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  8. update logger

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  9. update scenario run file

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  10. Merge remote-tracking branch 'refs/remotes/origin/master' into bs/exp… 

    …and_hcw
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    BinglingICL committed Sep 5, 2024
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Commits on Sep 6, 2024

  1. add comments in test

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  2. submit a run with 3 draws

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    BinglingICL committed Sep 6, 2024
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Commits on Sep 7, 2024

  1. assert to make sure the input the officer types match the defined

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    BinglingICL committed Sep 7, 2024
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  2. test minute salary scale down

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    BinglingICL committed Sep 7, 2024
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Commits on Sep 11, 2024

  1. add comment on creating alternative scenarios

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Commits on Sep 12, 2024

  1. temporary update plots for 3 scenarios

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  2. distribute extra budget for Other group matching their cost distribution

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    BinglingICL committed Sep 12, 2024
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  3. Merge branch 'refs/heads/master' into bs/expand_hcw 

    # Conflicts:
#	tests/test_healthsystem.py
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    BinglingICL committed Sep 12, 2024
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  4. submit a run of all 33 scenarios

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    BinglingICL committed Sep 12, 2024
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  5. fix checks failure

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    BinglingICL committed Sep 12, 2024
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Commits on Sep 17, 2024

  1. plot extra staff by cadre

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    BinglingICL committed Sep 17, 2024
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Commits on Sep 18, 2024

  1. plot extra cost by cadre

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    BinglingICL committed Sep 18, 2024
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Commits on Sep 20, 2024

  1. initial plots for all scenarios

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    BinglingICL committed Sep 20, 2024
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  2. initial plots for all scenarios

    @BinglingICL
    BinglingICL committed Sep 20, 2024
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Commits on Sep 23, 2024

  1. update comments

    @BinglingICL
    BinglingICL committed Sep 23, 2024
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  2. fix failing checks

    @BinglingICL
    BinglingICL committed Sep 23, 2024
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  3. add scenario settings with historical scaling from 2019 to 2024 and e… 

    …xpansion by cadre from 2025 to 2030 - todo: might need update scenarios of extra budget allocation and HRH cost growth rate
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    BinglingICL committed Sep 23, 2024
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Commits on Sep 24, 2024

  1. annotate bar plot for DALYs averted

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    BinglingICL committed Sep 24, 2024
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Commits on Sep 25, 2024

  1. plot for treatment counts

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    BinglingICL committed Sep 25, 2024
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Commits on Sep 26, 2024

  1. update scenario colors

    @BinglingICL
    BinglingICL committed Sep 26, 2024
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  2. plot yearly dalys and staff

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    BinglingICL committed Sep 26, 2024
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  3. adjust figsize

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    BinglingICL committed Sep 26, 2024
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  4. reverse legend order

    @BinglingICL
    BinglingICL committed Sep 26, 2024
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  5. minor ajdust

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    BinglingICL committed Sep 26, 2024
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Commits on Oct 2, 2024

  1. update scenario names

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    BinglingICL committed Oct 2, 2024
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  2. try plot 3D plots using 4D data

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    BinglingICL committed Oct 2, 2024
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Commits on Oct 4, 2024

  1. update the 3D plot

    @BinglingICL
    BinglingICL committed Oct 4, 2024
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  2. try multiple linear regression

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    BinglingICL committed Oct 4, 2024
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Commits on Oct 7, 2024

  1. try extract more results and plot to understand the results

    @BinglingICL
    BinglingICL committed Oct 7, 2024
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  2. anova analysis and more plot

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    BinglingICL committed Oct 7, 2024
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Commits on Oct 9, 2024

  1. plot never ran appts and hcw time gap/needed to run those appts

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    BinglingICL committed Oct 9, 2024
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Commits on Oct 10, 2024

  1. update data prepare file

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    BinglingICL committed Oct 10, 2024
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  2. plot more and delete some

    @BinglingICL
    BinglingICL committed Oct 10, 2024
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Commits on Oct 11, 2024

  1. plot more never ran appts results

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    BinglingICL committed Oct 11, 2024
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Commits on Oct 15, 2024

  1. check summary logger Capacity

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    BinglingICL committed Oct 15, 2024
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Commits on Oct 16, 2024

  1. plot never ran appts info

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    BinglingICL committed Oct 16, 2024
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  2. minor formatting

    @BinglingICL
    BinglingICL committed Oct 16, 2024
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  3. extract fraction of hcw time used

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    BinglingICL committed Oct 16, 2024
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Commits on Oct 17, 2024

  1. plot fraction of hcw time used

    @BinglingICL
    BinglingICL committed Oct 17, 2024
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Commits on Oct 19, 2024

  1. extract and plot results of hcw time by cadre and treatment

    @BinglingICL
    BinglingICL committed Oct 19, 2024
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Commits on Oct 20, 2024

  1. minor update

    @BinglingICL
    BinglingICL committed Oct 20, 2024
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  2. plot time used increased of C + P scenario

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    BinglingICL committed Oct 20, 2024
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Commits on Oct 21, 2024

  1. more plots of time used increased of C + P scenario

    @BinglingICL
    BinglingICL committed Oct 21, 2024
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  2. more plots

    @BinglingICL
    BinglingICL committed Oct 21, 2024
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Commits on Oct 22, 2024

  1. comment results and plots, which may be less relevant

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  2. reformat

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  3. add todo for new loggers

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    BinglingICL committed Oct 22, 2024
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  4. Merge remote-tracking branch 'refs/remotes/origin/master' into bs/exp… 

    …and_hcw

# Conflicts:
#	src/tlo/methods/healthsystem.py
    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  5. fix failing checks

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    BinglingICL committed Oct 22, 2024
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  6. prepare the "better scenario" indicated by never ran services cost gap

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  7. undo the changes for historical scaling

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  8. to test the "best" scenario

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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  9. fix series have no columns

    @BinglingICL
    BinglingICL committed Oct 22, 2024
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Commits on Oct 23, 2024

  1. fix the issue of running only one scenario

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    BinglingICL committed Oct 23, 2024
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Commits on Oct 24, 2024

  1. try add suumary logger of fraction of time used by officer, level and… 

    … district
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    BinglingICL committed Oct 24, 2024
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  2. add fraction of time used by officer, level and district to summary c… 

    …ounter
    @BinglingICL
    BinglingICL committed Oct 24, 2024
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  3. try add summary logger of appt num by appt and facility id

    @BinglingICL
    BinglingICL committed Oct 24, 2024
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  4. modify summary logger of appt num by appt and facility id

    @BinglingICL
    BinglingICL committed Oct 24, 2024
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  5. modify summary logger of appt num by appt and facility id

    @BinglingICL
    BinglingICL committed Oct 24, 2024
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  6. a possible issue

    @BinglingICL
    BinglingICL committed Oct 24, 2024
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  7. add summary logger of fraction of time used by officer district

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    BinglingICL committed Oct 24, 2024
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Commits on Oct 25, 2024

  1. try fixing error of non-usual facilities

    @BinglingICL
    BinglingICL committed Oct 25, 2024
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