Fix LaTeX build config. (#349) #438
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| name: Build and test | |
| # The main C++ CI is split into three steps: lint, build, and system tests. The | |
| # linting and building are independent but we make the build wait so as not to | |
| # waste resources compiling and testing a commit which doesn't pass the linter. | |
| # | |
| # System tests are slow and need input data. To save caching, network, and job | |
| # time we only run the full system tests on Ubuntu (although this can easily be | |
| # changed). | |
| on: | |
| push: | |
| branches: ["main"] | |
| pull_request: | |
| merge_group: | |
| workflow_dispatch: | |
| concurrency: | |
| # Skip intermediate builds: always. | |
| # Cancel intermediate builds: always. | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| linting: | |
| name: Linting checks with pre-commit | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: ucl/composite-actions/pre-commit@v1 | |
| build: | |
| name: ${{ matrix.build_type }} build on ${{ matrix.os }} with build testing ${{ matrix.build_testing }} | |
| needs: linting | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, ubuntu-20.04, windows-latest, macos-latest] | |
| build_type: [Debug, Release] | |
| build_testing: [ON, OFF] | |
| exclude: | |
| # Currently our tests don't compile, and nor do we have a coverage | |
| # build in Windows so skip this. | |
| - os: windows-latest | |
| build_testing: ON | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up MATLAB | |
| uses: matlab-actions/[email protected] | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.9' | |
| # ------------------------------------------------------------------------------- | |
| # Ubuntu | |
| - name: Install dependencies for Ubuntu | |
| if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libfftw3-dev libhdf5-dev libgomp1 python3 lcov | |
| # ------------------------------------------------------------------------------- | |
| # Windows | |
| - name: Install miniconda for Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.9 | |
| - name: Install dependencies for Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| shell: pwsh | |
| run: | | |
| conda install fftw --yes | |
| echo "FFTWDIR=C:\Miniconda\envs\test\Library" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append | |
| conda install hdf5 | |
| echo "HDF5_DIR=C:\Miniconda\envs\test\Library" | Out-File -FilePath $Env:GITHUB_ENV -Encoding utf8 -Append | |
| # ------------------------------------------------------------------------------- | |
| # MacOS | |
| - name: Install dependencies for MacOS | |
| if: ${{ contains(matrix.os, 'macos') }} | |
| run: brew install fftw hdf5 | |
| - name: Fix omp headers not linked on MacOS | |
| if: ${{ contains(matrix.os, 'macos') }} | |
| run: | | |
| brew unlink libomp | |
| brew link --force libomp | |
| export DOMP_ROOT_MAC=-DOMP_ROOT=$(brew --prefix libomp) | |
| echo "DOMP_ROOT_MAC=${DOMP_ROOT_MAC}" >> $GITHUB_ENV | |
| # ------------------------------------------------------------------------------- | |
| - name: Create build environment | |
| run: | | |
| cmake -E make_directory ${{ runner.workspace }}/build | |
| - name: Compile with Werror on Ubuntu and MacOS (not Windows) | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| run: echo "CXXFLAGS=-Werror" >> $GITHUB_ENV | |
| - name: Configure TDMS | |
| shell: bash | |
| working-directory: ${{ runner.workspace }}/build | |
| run: | | |
| cmake ${GITHUB_WORKSPACE}/tdms -DCMAKE_VERBOSE_MAKEFILE:BOOL=ON \ | |
| -DCMAKE_BUILD_TYPE=${{ matrix.build_type }} \ | |
| -DBUILD_TESTING=${{ matrix.build_testing }} \ | |
| -DCODE_COVERAGE=${{ matrix.build_testing }} \ | |
| ${DOMP_ROOT_MAC} | |
| # This 👆 env variable only exists on MacOS builds to fix the OMP | |
| # homebrew/PATH problem. | |
| - name: Build TDMS | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| cmake --build . --config ${{ matrix.build_type }} | |
| - name: Smoke test the build on MacOS and Ubuntu | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| ./tdms -h | |
| ./tdms --version | |
| - name: Smoke test the build on Windows | |
| if: ${{ contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build/${{ matrix.build_type }} | |
| shell: bash | |
| run: | | |
| export PATH=$(dirname "$(which MATLAB)")/win64/:$PATH | |
| export PATH=/c/Miniconda/envs/test/Library/bin/:$PATH | |
| ./tdms.exe -h | |
| ./tdms.exe --version | |
| # ------------------------------------------------------------------------------- | |
| # Unit tests | |
| - name: Produce MATLAB unit test data | |
| if: matrix.build_testing == 'ON' | |
| uses: matlab-actions/run-command@v1 | |
| with: | |
| command: cd('tdms/tests/unit/benchmark_scripts/'), setup_unit_tests | |
| - name: Produce hdf5 unit test data | |
| if: matrix.build_testing == 'ON' | |
| run: | | |
| pip install -r ${{ github.workspace }}/tdms/tests/requirements.txt | |
| python ${{ github.workspace }}/tdms/tests/unit/benchmark_scripts/create_hdf5_test_file.py | |
| - name: Run TDMS unit tests | |
| if: matrix.build_testing == 'ON' | |
| working-directory: ${{ runner.workspace }}/build | |
| shell: bash | |
| run: | | |
| export OMP_NUM_THREADS=1 | |
| ctest -C ${{ matrix.build_type }} --output-on-failure --extra-verbose | |
| - name: Run coverage analysis with lcov | |
| if: matrix.build_testing == 'ON' && contains(matrix.os, 'ubuntu') | |
| shell: bash | |
| # Create the coverage summary, filter out dependencies' coverage then | |
| # print human-readable summary in the build logs. | |
| run: | | |
| lcov --capture --directory ${{ runner.workspace }}/build/CMakeFiles/tdms_tests.dir/src --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info | |
| lcov --remove coverage.info '/Library/*' --output-file coverage.info | |
| lcov --remove coverage.info '/Applications/*' --output-file coverage.info | |
| lcov --list coverage.info | |
| - name: Upload coverage reports to Codecov | |
| if: matrix.build_testing == 'ON' && contains(matrix.os, 'ubuntu') | |
| uses: codecov/codecov-action@v3 | |
| # ------------------------------------------------------------------------------- | |
| # Upload build artefact for system tests | |
| - name: Tar the build result to maintain permissions | |
| # https://github.com/actions/upload-artifact#maintaining-file-permissions-and-case-sensitive-files | |
| # https://github.com/actions/upload-artifact/issues/38 | |
| if: ${{ !contains(matrix.os, 'windows') }} | |
| working-directory: ${{ runner.workspace }}/build | |
| run: tar -cvf tdms_build.tar tdms | |
| - name: Upload build results | |
| if: matrix.build_testing == 'OFF' && matrix.build_type == 'Debug' | |
| # If we use the build with testing ON, we'd also need to copy over (and | |
| # install) the libtdms.so so use the OFF build for simplicity. | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: tdms_build_${{ matrix.os }} | |
| path: ${{ runner.workspace }}/build/tdms_build.tar | |
| retention-days: 1 | |
| # Only run the slow system tests on Ubuntu. | |
| # Cache the input data to save network usage. | |
| system-tests: | |
| name: System tests ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| needs: build | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest] #, macos-latest] | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v3 | |
| - name: Set up MATLAB | |
| uses: matlab-actions/[email protected] | |
| - name: Install HDF5 libraries for Ubuntu | |
| if: ${{ contains(matrix.os, 'ubuntu') }} | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install libhdf5-dev | |
| - name: Install Python dependencies | |
| shell: bash | |
| run: | | |
| python3 -m pip install -r ${GITHUB_WORKSPACE}/tdms/tests/requirements.txt | |
| - name: Download build result | |
| uses: actions/download-artifact@v3 | |
| with: | |
| name: tdms_build_${{ matrix.os }} | |
| path: ${{ runner.workspace }} | |
| - name: Untar | |
| working-directory: ${{ runner.workspace }} | |
| run: | | |
| tar -xvf tdms_build.tar | |
| - name: Setup cache of test data | |
| id: cache-test-data | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ github.workspace }}/tdms/tests/system/data | |
| key: test_data | |
| - name: Run TDMS system tests | |
| working-directory: ${{ runner.workspace }} | |
| shell: bash | |
| run: | | |
| export OMP_NUM_THREADS=2 | |
| pytest ${GITHUB_WORKSPACE}/tdms/tests/system/ --ignore=${GITHUB_WORKSPACE}/tdms/tests/system/test_regen.py -s -x |