Merge branch 'master' of github.com:TuftsBCB/RegDiffusion #18

	name: Build and Deploy Sphinx Documentation

	on:
	push:
	branches:
	- master
	pull_request:
	branches:
	- master

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v3
	with:
	persist-credentials: false

	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: '3.10'

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install sphinx sphinx_book_theme sphinx myst-parser sphinx-copybutton --upgrade
	pip install numpy
	pip install pandas
	pip install torch --index-url https://download.pytorch.org/whl/cpu
	pip install tqdm
	pip install scanpy
	pip install scikit-learn
	pip install h5py
	pip install pyvis

	- name: Build documentation
	run: \|
	sphinx-apidoc -o docs regdiffusion/
	cd docs
	make html

	- name: Deploy to GitHub Pages
	uses: peaceiris/actions-gh-pages@v3
	with:
	github_token: ${{ secrets.GITHUB_TOKEN }}
	publish_dir: ./docs/_build/html

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