refactor + cleanup code #109
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| name: run | |
| on: | |
| push: | |
| branches: ['**'] | |
| tags: ['**'] | |
| paths-ignore: ['.gitignore', 'LICENSE*', 'LICENCE*', 'README.md', 'SIRF_data_preparation/*'] | |
| jobs: | |
| check: | |
| runs-on: ubuntu-latest | |
| container: | |
| image: ghcr.io/synerbi/sirf:edge | |
| options: --user root # https://github.com/actions/checkout/issues/956 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Install dependencies | |
| shell: bash -el {0} | |
| run: | | |
| source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
| pip install git+https://github.com/TomographicImaging/Hackathon-000-Stochastic-QualityMetrics | |
| if test -f apt.txt; then | |
| sudo apt-get update | |
| xargs -a apt.txt sudo apt-get install -y | |
| fi | |
| if test -f environment.yml; then | |
| sed -i '/^name:.*/d' environment.yml | |
| conda env update -n base | |
| fi | |
| if test -f requirements.txt; then | |
| pip install -r requirements.txt | |
| fi | |
| conda list | |
| - name: Test imports | |
| shell: bash -el {0} | |
| run: | | |
| source /opt/SIRF-SuperBuild/INSTALL/bin/env_sirf.sh | |
| curl -fsSL https://raw.githubusercontent.com/SyneRBI/PETRIC/main/petric.py > petric.py | |
| test -f main.py || ln -s main_ISTA.py main.py | |
| python <<EOF | |
| from main import Submission, submission_callbacks | |
| from cil.optimisation.algorithms import Algorithm | |
| assert issubclass(Submission, Algorithm) | |
| assert isinstance(submission_callbacks, list) | |
| assert all(callable(callback) for callback in submission_callbacks) | |
| EOF | |
| full: | |
| if: startsWith(github.ref, 'refs/tags') | |
| runs-on: [self-hosted, docker, cuda] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| with: {fetch-depth: 0, submodules: recursive} | |
| - run: petric |