Bumped version and date. #14
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| on: | |
| push | |
| name: rebuild | |
| jobs: | |
| rebuild: | |
| name: "Rebuilding dependency list." | |
| runs-on: ubuntu-latest | |
| container: bioconductor/bioconductor_docker:devel | |
| steps: | |
| - name: Get site library path | |
| run: | | |
| location=$(R --slave -e "cat(.libPaths()[1])") | |
| echo "R_PKG_DIR=${location}" >> $GITHUB_ENV | |
| - name: Cache packages | |
| uses: actions/cache@v3 | |
| with: | |
| path: ${{ env.R_PKG_DIR }} | |
| key: installed-packages | |
| - name: Install packages | |
| run: | | |
| BiocManager::install('rebook') | |
| shell: Rscript {0} | |
| - name: Check out repo | |
| run: | | |
| git clone "https://oauth2:${{ secrets.GITHUB_TOKEN }}@github.com/${{ github.repository }}" ./book | |
| cd ./book && git checkout "${{ github.ref_name }}" | |
| - name: Update DESCRIPTION and Makefile | |
| working-directory: ./book | |
| run: | | |
| rebook::updateDependencies("inst/book", path='DESCRIPTION') | |
| rebook::configureBook(prefix="SingleR") | |
| shell: Rscript {0} | |
| - name: Committing | |
| working-directory: ./book | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Action" | |
| git add . | |
| git commit -m "Rebuilding sundries." || true | |
| git push |