Hi there, welcome to my GitHub 👋

🐵 About me

• Ph.D. candidate in Dr. David Koslicki's lab, Penn State University
• Domain: Bioinformatics, Metagenomics, Genomics data science
• Email: [email protected]
• Resume

🐝 Currently working on

• Metagenomic analysis and method development
• Knowledge graph and graph learning

🏆 Selected projects:

• Knowledge graph and graph-based genomic data science:
  1. MetagenomicKG: construction of a metagenomic-specific knowledge graph and how it can be used for metagenomic data mining.
  2. ARAX: a knowledge-graph-based computational reasoning tool for translational biomedicine.
• Metagenomic analysis and algorithm development:
  1. CMash: a modified containment MinHash algorithm for multi-resolution k-mer-based similarity estimation.
  2. FracMinHash vs Syncmer: bridging the FracMinHash algorithm with syncmers for metagenomic analysis.
  3. FracMinHash for functional profiling: utilization of the FracMinHash algorithm for metagenomic functional profiles.
• Genomic data analysis
  1. AIAP: an integrative pipeline for comprehensive analysis of ATAC-seq dataset implemented in Docker and Singularity.

⚒️ Tech stack