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Fix broken web site time series plots. #249

Merged
merged 10 commits into from
Mar 30, 2024
Merged

Fix broken web site time series plots. #249

merged 10 commits into from
Mar 30, 2024

Commits on Mar 29, 2024

  1. Change NowcastWorker mock to pytest fixture 

    Test suite maintenance.

re: issue #81
    @douglatornell
    douglatornell committed Mar 29, 2024
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  2. Update make_plots worker main() function docstring 

    Removed not informative "Set up and run the worker." line at the beginning.

re: issue #121
    @douglatornell
    douglatornell committed Mar 29, 2024
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  3. Change logging mocks to pytest caplog fixture 

    Replace unittest.mock.patch decorator with pytest caplog fixture for tests of
logging.

Test suite maintenance re: issue #82.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  4. Add unit tests for YAML config file elements 

    Add unit tests for production YAML config file elements related to worker;
re: issue #117.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  5. Remove unused ferry_data_dir configuration retrieval 

    The ferry_data_dir configuration was retrieved but not used in the make_plots.py
worker script. This change removes the unneeded line to tidy up the code and
avoid potential confusion in the future.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  6. Update to V21-11 dataset URLs in config & tests 

    The URLs for '3d tracer fields' and '3d biology fields' have been updated in the
test_make_plots.py and nowcast.yaml files.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  7. Rename physics dataset keys to '3d physics fields' 

    This commit changes the '3d tracer fields' key in the nowcast.yaml configuration
file, the make_plots.py worker and test_make_plots.py tests to
'3d physics fields'. This change better reflects in the relevant data source
URLs.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  8. Update zooplankton field var names in make_plots 

    Update zooplankton field variable names for the time series plot function in the
make_plots worker. Specifically, change "mesozooplankton" and "microzooplankton"
to "z1_zooplankton" and "z2_zooplankton". This update ensures consistency with
the V21-11 model output variable names.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  9. Replace Mesodinium rubrum w/ Diatoms in time series plots 

    In the 'make_plots' worker, the field variable 'mesodinium' was changed to
'diatoms' for the time series plots. The 'diatoms_flagellates_timeseries'
dictionary key is adjusted accordingly. This is necessary due to the removal of
the Mesodinium rubrum variable from the V21-11 model calculations and output.
    @douglatornell
    douglatornell committed Mar 29, 2024
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  10. Add z1 & z2 zooplankton to color dict in website_theme 

    Two new types of zooplankton, 'z1_zooplankton' and 'z2_zooplankton', have been
added to the color dictionary of nowcast/figures/website_theme.py file. This
change would allow the correct color to be displayed for these new types in the
corresponding plots.
    @douglatornell
    douglatornell committed Mar 29, 2024
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