Merge pull request #648 from kimyen/v1.9.1-rc-docs

update docs
Sage-Bionetworks · Jan 18, 2019 · 489d577 · 489d577
2 parents 50de7a9 + 6fc1275
commit 489d577
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Showing 34 changed files with 2,796 additions and 495 deletions.
diff --git a/docs/build/html/.buildinfo b/docs/build/html/.buildinfo
@@ -1,4 +1,4 @@
 # Sphinx build info version 1
 # This file hashes the configuration used when building these files. When it is not found, a full rebuild will be done.
-config: f44d763881eb2f384aa0384e43b7de52
+config: a8c6b29b14987fc58c61db8838ee4956
 tags: 645f666f9bcd5a90fca523b33c5a78b7
diff --git a/docs/build/html/Activity.html b/docs/build/html/Activity.html
@@ -1,26 +1,33 @@
 
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<!doctype html>
 
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Provenance &#8212; Synapse Python Client 1.9.0 documentation</title>
+    <title>Provenance &#8212; Synapse Python Client 1.9.1 documentation</title>
     <link rel="stylesheet" href="_static/custom.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
     <script type="text/javascript" src="_static/jquery.js"></script>
     <script type="text/javascript" src="_static/underscore.js"></script>
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
+    <script type="text/javascript" src="_static/bizstyle.js"></script>
+    <link rel="shortcut icon" href="_static/favicon.png"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Annotations" href="Annotations.html" />
-    <link rel="prev" title="Evaluations" href="Evaluation.html" /> 
+    <link rel="prev" title="Evaluations" href="Evaluation.html" />
+    <meta name="viewport" content="width=device-width,initial-scale=1.0">
+    <!--[if lt IE 9]>
+    <script type="text/javascript" src="_static/css3-mediaqueries.js"></script>
+    <![endif]-->
   </head><body>
 <div class="header">
-  <a href="https://www.synapse.org/"><img src="_static/synapse_logo.png" alt='Synapse'/></a>
+  <a href="https://www.synapse.org/"><img src="_static/synapse_logo.png" alt='Synapse' style="object-fit: scale-down; height:100%"/></a>
   <h1>Synapse Python Client API</h1>
 </div>
 
@@ -39,11 +46,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="Evaluation.html" title="Evaluations"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.0 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.1 documentation</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper">
+<div id="searchbox" style="display: none" role="search">
+  <h3>Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" />
+      <input type="submit" value="Go" />
+      <input type="hidden" name="check_keywords" value="yes" />
+      <input type="hidden" name="area" value="default" />
+    </form>
+    </div>
+</div>
+<script type="text/javascript">$('#searchbox').show(0);</script>
   <h3><a href="index.html">Table of Contents</a></h3>
   <ul>
 <li><a class="reference internal" href="#">Provenance</a><ul>
@@ -69,18 +88,6 @@ <h3>This Page</h3>
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
-<div id="searchbox" style="display: none" role="search">
-  <h3>Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" />
-      <input type="submit" value="Go" />
-      <input type="hidden" name="check_keywords" value="yes" />
-      <input type="hidden" name="area" value="default" />
-    </form>
-    </div>
-</div>
-<script type="text/javascript">$('#searchbox').show(0);</script>
         </div>
       </div>
 
@@ -168,10 +175,7 @@ <h2>Activity<a class="headerlink" href="#activity" title="Permalink to this head
 </tr>
 </tbody>
 </table>
-<dl class="docutils">
-<dt>See also: <a class="reference external" href="https://sagebionetworks.jira.com/wiki/display/PLFM/Analysis+Provenance+in+Synapse">Provenance in Synapse</a></dt>
-<dd>and the <a class="reference external" href="http://www.w3.org/TR/prov-o/">W3C’s provenance ontology</a></dd>
-</dl>
+<p>See also: The <a class="reference external" href="http://www.w3.org/TR/prov-o/">W3C’s provenance ontology</a></p>
 <dl class="method">
 <dt id="synapseclient.activity.Activity.executed">
 <code class="descname">executed</code><span class="sig-paren">(</span><em>target=None</em>, <em>targetVersion=None</em>, <em>url=None</em>, <em>name=None</em><span class="sig-paren">)</span><a class="headerlink" href="#synapseclient.activity.Activity.executed" title="Permalink to this definition">¶</a></dt>
@@ -260,12 +264,12 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="Evaluation.html" title="Evaluations"
              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.0 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.1 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer">
     &copy; <a href="http://sagebase.org/">Sage Bionetworks</a>.
-      Last updated on Sep 28, 2018.
+      Last updated on Jan 17, 2019.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.1.
     </div>
     <script type="text/javascript">

diff --git a/docs/build/html/Annotations.html b/docs/build/html/Annotations.html
@@ -1,26 +1,33 @@
 
-<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN"
-  "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+
+<!doctype html>
 
 <html xmlns="http://www.w3.org/1999/xhtml">
   <head>
     <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
     <meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
-    <title>Annotations &#8212; Synapse Python Client 1.9.0 documentation</title>
+    <title>Annotations &#8212; Synapse Python Client 1.9.1 documentation</title>
     <link rel="stylesheet" href="_static/custom.css" type="text/css" />
     <link rel="stylesheet" href="_static/pygments.css" type="text/css" />
+
     <script type="text/javascript" id="documentation_options" data-url_root="./" src="_static/documentation_options.js"></script>
     <script type="text/javascript" src="_static/jquery.js"></script>
     <script type="text/javascript" src="_static/underscore.js"></script>
     <script type="text/javascript" src="_static/doctools.js"></script>
     <script async="async" type="text/javascript" src="https://cdnjs.cloudflare.com/ajax/libs/mathjax/2.7.1/MathJax.js?config=TeX-AMS-MML_HTMLorMML"></script>
+    <script type="text/javascript" src="_static/bizstyle.js"></script>
+    <link rel="shortcut icon" href="_static/favicon.png"/>
     <link rel="index" title="Index" href="genindex.html" />
     <link rel="search" title="Search" href="search.html" />
     <link rel="next" title="Wiki" href="Wiki.html" />
-    <link rel="prev" title="Provenance" href="Activity.html" /> 
+    <link rel="prev" title="Provenance" href="Activity.html" />
+    <meta name="viewport" content="width=device-width,initial-scale=1.0">
+    <!--[if lt IE 9]>
+    <script type="text/javascript" src="_static/css3-mediaqueries.js"></script>
+    <![endif]-->
   </head><body>
 <div class="header">
-  <a href="https://www.synapse.org/"><img src="_static/synapse_logo.png" alt='Synapse'/></a>
+  <a href="https://www.synapse.org/"><img src="_static/synapse_logo.png" alt='Synapse' style="object-fit: scale-down; height:100%"/></a>
   <h1>Synapse Python Client API</h1>
 </div>
 
@@ -39,11 +46,23 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="Activity.html" title="Provenance"
              accesskey="P">previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.0 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.1 documentation</a> &#187;</li> 
       </ul>
     </div>
       <div class="sphinxsidebar" role="navigation" aria-label="main navigation">
         <div class="sphinxsidebarwrapper">
+<div id="searchbox" style="display: none" role="search">
+  <h3>Quick search</h3>
+    <div class="searchformwrapper">
+    <form class="search" action="search.html" method="get">
+      <input type="text" name="q" />
+      <input type="submit" value="Go" />
+      <input type="hidden" name="check_keywords" value="yes" />
+      <input type="hidden" name="area" value="default" />
+    </form>
+    </div>
+</div>
+<script type="text/javascript">$('#searchbox').show(0);</script>
   <h3><a href="index.html">Table of Contents</a></h3>
   <ul>
 <li><a class="reference internal" href="#">Annotations</a><ul>
@@ -66,18 +85,6 @@ <h3>This Page</h3>
             rel="nofollow">Show Source</a></li>
     </ul>
    </div>
-<div id="searchbox" style="display: none" role="search">
-  <h3>Quick search</h3>
-    <div class="searchformwrapper">
-    <form class="search" action="search.html" method="get">
-      <input type="text" name="q" />
-      <input type="submit" value="Go" />
-      <input type="hidden" name="check_keywords" value="yes" />
-      <input type="hidden" name="area" value="default" />
-    </form>
-    </div>
-</div>
-<script type="text/javascript">$('#searchbox').show(0);</script>
         </div>
       </div>
 
@@ -151,12 +158,12 @@ <h3>Navigation</h3>
         <li class="right" >
           <a href="Activity.html" title="Provenance"
              >previous</a> |</li>
-        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.0 documentation</a> &#187;</li> 
+        <li class="nav-item nav-item-0"><a href="index.html">Synapse Python Client 1.9.1 documentation</a> &#187;</li> 
       </ul>
     </div>
     <div class="footer">
     &copy; <a href="http://sagebase.org/">Sage Bionetworks</a>.
-      Last updated on Sep 28, 2018.
+      Last updated on Jan 17, 2019.
       Created using <a href="http://sphinx-doc.org/">Sphinx</a> 1.8.1.
     </div>
     <script type="text/javascript">