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[GEN-1612] Use 16.7-consortium for CRC 3.1 (#144)
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* use 16.7-consortium for CRC 3.1

* add comments

* use mg 16.6-consortium

* update to use  16.1-public release and v54 of mapping file

* switch to 16.7-consortium release

* update to latest ver
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rxu17 authored Dec 4, 2024
1 parent bf74e1a commit 49e854e
Showing 1 changed file with 7 additions and 4 deletions.
11 changes: 7 additions & 4 deletions geniesp/bpc_redcap_export_mapping.py
Original file line number Diff line number Diff line change
Expand Up @@ -521,7 +521,8 @@ class BpcProjectRunner(metaclass=ABCMeta):
_SPONSORED_PROJECT = ""
# Redcap codes to cbioportal mapping synid and form key is in
# version 38, 42 were last stable version(s)
_REDCAP_TO_CBIOMAPPING_SYNID = "syn25712693.53"
# NOTE: Should be pointed towards latest version of table
_REDCAP_TO_CBIOMAPPING_SYNID = "syn25712693.55"
# Run `git rev-parse HEAD` in Genie_processing directory to obtain shadigest
_GITHUB_REPO = None
# Mapping from Synapse Table to derived variables
Expand All @@ -532,9 +533,11 @@ class BpcProjectRunner(metaclass=ABCMeta):
"production":"syn21446571",
"staging": "syn64018293"
}
# main GENIE release folder (15.4-consortium)
# Must use consortium release, because SEQ_YEAR is used
_MG_RELEASE_SYNID = "syn53170398"
# main GENIE release folder
# NOTE: Must use consortium release, because SEQ_YEAR is used
# NOTE: Must match release tracking sheet and release table info
# for the given cohort
_MG_RELEASE_SYNID = "syn63602196"
# PRISSMM documentation table
_PRISSMM_SYNID = "syn22684834"
# REDCap global response set
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