Updating tem demo (#841)

Updated TEM demo to use access EMMO with w3id URLs.
SINTEF · Jul 3, 2024 · 95b7737 · 95b7737
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commit 95b7737
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Showing 3 changed files with 25 additions and 27 deletions.
diff --git a/examples/TEM_data/data/resources.yaml b/examples/TEM_data/data/resources.yaml
@@ -21,9 +21,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         temimage: http://onto-ns.com/meta/0.1/TEMImage#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
-        oteio: http://emmo.info/oteio#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
+        oteio: https://w3id.org/emmo/domain/oteio#
       triples:
         - [temimage:filename,   map:mapsTo,  oteio.FileName]
         - [temimage:data,       map:mapsTo,  emmo.Array]
@@ -44,9 +44,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         temimage: http://onto-ns.com/meta/0.1/TEMImage#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
-        oteio: http://emmo.info/oteio#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
+        oteio: https://w3id.org/emmo/domain/oteio#
       triples:
         - [temimage:filename,   map:mapsTo,  oteio.FileName]
         - [temimage:data,       map:mapsTo,  emmo.Array]
@@ -67,9 +67,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         temimage: http://onto-ns.com/meta/0.1/TEMImage#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
-        oteio: http://emmo.info/oteio#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
+        oteio: https://w3id.org/emmo/domain/oteio#
       triples:
         - [temimage:filename,   map:mapsTo,  oteio.FileName]
         - [temimage:data,       map:mapsTo,  emmo.Array]
@@ -85,9 +85,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         image: http://onto-ns.com/meta/0.1/Image#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
-        oteio: http://emmo.info/oteio#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
+        oteio: https://w3id.org/emmo/domain/oteio#
       triples:
         - [image:filename,   map:mapsTo,  oteio.FileName]
         - [image:data,       map:mapsTo,  emmo.Array]
@@ -129,10 +129,10 @@ data_resources:
       mappingType: mappings
       prefixes:
         ps: http://onto-ns.com/meta/0.1/PrecipitateStatistics#
-        mo: http://emmo.info/microstructure#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
-        oteio: http://emmo.info/oteio#
+        mo: https://w3id.org/emmo/domain/microstructure#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
+        oteio: https://w3id.org/emmo/domain/oteio#
       triples:
         - [ps:alloy,             map:mapsTo, mo:Alloy]
         - [ps:condition,         map:mapsTo, mo:AlloyCondition]
@@ -170,9 +170,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         comp: http://onto-ns.com/meta/0.1/Composition#
-        mo: http://emmo.info/microstructure#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
+        mo: https://w3id.org/emmo/domain/microstructure#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
       triples:
         - [comp:alloy,               map:mapsTo, mo:Alloy]
         - [comp:elements,            map:mapsTo, emmo:ChemicalElement]
@@ -188,9 +188,9 @@ data_resources:
       mappingType: mappings
       prefixes:
         chem: http://onto-ns.com/meta/0.3/Chemistry#
-        mo: http://emmo.info/microstructure#
-        map: http://emmo.info/domain-mappings#
-        emmo: http://emmo.info/emmo#
+        mo: https://w3id.org/emmo/domain/microstructure#
+        map: https://w3id.org/emmo/domain/mappings#
+        emmo: https://w3id.org/emmo#
       triples:
         - [chem:alloy,     map:mapsTo, mo:Alloy]
         - [chem:elements,  map:mapsTo, emmo:ChemicalElement]

diff --git a/examples/TEM_data/demo.py b/examples/TEM_data/demo.py
@@ -1,5 +1,5 @@
 """Demo: access and use TEM data"""
-from tripper import RDF, Namespace, Triplestore
+from tripper import OTEIO, RDF, Namespace, Triplestore
 
 from tem_paths import indir, outdir
 from utils.utils import get_data, populate_triplestore
@@ -11,7 +11,6 @@
 ts.serialize(outdir / "resources.ttl")
 
 # Namespace used for the data resources
-OTEIO = Namespace("http://emmo.info/oteio#")
 PM = ts.bind("pm", "https://www.ntnu.edu/physmet/data#")
 
 

diff --git a/examples/TEM_data/tests/test_pipeline.py b/examples/TEM_data/tests/test_pipeline.py
@@ -3,15 +3,14 @@
 
 from otelib import OTEClient
 
-from tripper import EMMO, MAP, Namespace
+from tripper import EMMO, MAP, OTEIO, Namespace
 
 
 temimage = "6c8cm_008"
 thumbnail = outdir / f"{temimage}.png"
 
 # Namespaces
-MO = Namespace("http://emmo.info/microstructure#")
-OTEIO = Namespace("http://emmo.info/oteio#")
+MO = Namespace("https://w3id.org/emmo/domain/microstructure#")
 TEMIMAGE = Namespace("http://onto-ns.com/meta/0.1/TEMImage#")
 IMAGE = Namespace("http://onto-ns.com/meta/0.1/Image#")
 PS = Namespace("http://onto-ns.com/meta/0.1/PrecipitateStatistics#")