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@RudgeLab

Rudge Lab

README.md

RudgeLab

Synthetic Biology, Computational Biology and Complex Systems lab in the ICOS research group at Newcastle University run by Dr. Tim Rudge.

Useful resources

Contact: [email protected]

Lab code of conduct

How to contribute

Featured Software Tools

Genetic Design Automation: LOICA

Build Automation Control: PUDU

Data Management and Analysis: Flapjack

Bacterial Idividual Based Modelling: CellModeller

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  1. LOICA LOICA Public

    Logical Operators for Integrated Cell Algorithms

    Jupyter Notebook 6 2

  2. CellModeller CellModeller Public

    Forked from cellmodeller/CellModeller

    GPU-accelerated multicellular modelling framework

    Python 1 1

  3. Inverse_Characterization Inverse_Characterization Public

    Accurate Characterization of Dynamic Gene Expression and Growth Rate Profiles

    Jupyter Notebook

  4. WebCM WebCM Public

    WebCM is a web platform used to develop and run bacterial simulations

    JavaScript

Repositories

Showing 10 of 36 repositories
  • popdyn Public

    Population dynamics

    RudgeLab/popdyn’s past year of commit activity
    Jupyter Notebook 0 1 0 0 Updated Oct 28, 2024
  • PUDU Public

    Protocol Unified Design Unit

    RudgeLab/PUDU’s past year of commit activity
    Python 5 MIT 0 19 (3 issues need help) 0 Updated Oct 9, 2024
  • brain Public

    Reservoir computing with coupled genetic oscillators

    RudgeLab/brain’s past year of commit activity
    MATLAB 1 BSD-2-Clause 0 0 0 Updated Aug 2, 2024
  • napari-popdyn Public

    Napari plugin for quantitative population dynamics analysis

    RudgeLab/napari-popdyn’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Apr 4, 2024
  • WebCM Public

    WebCM is a web platform used to develop and run bacterial simulations

    RudgeLab/WebCM’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Mar 22, 2024
  • CellModeller Public Forked from cellmodeller/CellModeller

    GPU-accelerated multicellular modelling framework

    RudgeLab/CellModeller’s past year of commit activity
    Python 1 48 0 1 Updated Feb 23, 2024
  • GenePhLo Public

    Phase-based genetic logic circuit simulation

    RudgeLab/GenePhLo’s past year of commit activity
    1 0 0 0 Updated Feb 15, 2024
  • FluoPi Public

    Code and teaching materials for UC/BackyardBrains raspberry pi "macro" scope.

    RudgeLab/FluoPi’s past year of commit activity
    Jupyter Notebook 26 15 2 3 Updated Dec 30, 2023
  • LOICA Public

    Logical Operators for Integrated Cell Algorithms

    RudgeLab/LOICA’s past year of commit activity
    Jupyter Notebook 6 MIT 2 12 0 Updated Sep 27, 2023
  • CellModeller5 Public
    RudgeLab/CellModeller5’s past year of commit activity
    C++ 0 MIT 0 0 0 Updated Aug 13, 2023
View all repositories

People

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