Update loadDrugMechDB.py to include treats edges for indication paths #264
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Looks like this needs a refactor. |
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Given the "treats"/"ameliorates" edge refactor, I hesitate to approve this PR. I suggest we look at it more before merging it into main. |
eKathleenCarter
added
the
Biological Context QC
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From the DrugMechDB paper: "DrugMechDB was constructed considering drug-disease indications from the DrugCentral So each drug-disease pair in each path in the source file could be considered an indication, at least as of 2020. |
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Each indication path in drugmechdb describes the COP for a drug-disease indication pair, but the "treats" edge is not explicitly included. I edited the parser to introduce these as "biolink:treats" edges.