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ROBOKOP U24

README.md

ROBOKOP: Reasoning Over Biomedical Objects linked in Knowledge Oriented Pathways

Introduction

ROBOKOP is a publicly available collection of harmonized biological, chemical, and medical knowledge bases. These knowledge bases are created from other publicly available sources and transformed into a harmonized collection by the ORION pipeline. These individual KGs are then merged into a single large KG: ROBOKOP KG. Each source and aggregate graph is represented as a Knowledge Graph (KG), and each of these KGs is exposed with a common set of APIs. The ROBOKOP KG can also be queried by a user-friendly interface (qgraph). The user interface and links to the APIs can be found at http://robokop.renci.org.

Feedback

Please provide feedback on any aspect of the ROBOKOP project by going to the Feedback repository and logging an issue.

Support

ROBOKOP is a joint creation of the Renaissance Computing Institute (RENCI) at the University of North Carolina at Chapel Hill and CoVar LLC. The prototype was developed with funding from the National Center for Advancing Translational Sciences, National Institutes of Health (award #OT2TR002514). ROBOKOP's continued development is supported with joint funding from the National Institute of Environmental Health Sciences and the Office of Data Science Strategy within the National Institutes of Health (award #U24ES035214).

Resources

Here are a few repositories of interest outside of the ROBOKOP org:

  • Biolink Model is the data model used by ROBOKOP
  • Plater ingests a Biolink-compliant KG and exposes standard APIs
  • TRAPI is the graph query API used by the NCATS Translator project.
  • Reasoner Transpiler converts TRAPI queries into cypher

Pinned Loading

  1. Feedback Feedback Public

    Feedback on the ROBOKOP project

  2. ORION ORION Public

    Code that parses datasets from various sources and converts them to load graph databases.

    Python 12 13

  3. RoboDocumentation RoboDocumentation Public

    Documentation for ROBOKOP.

    Jupyter Notebook 1

  4. qgraph qgraph Public

    ROBOKOP UI

    JavaScript 1

Repositories

Showing 10 of 15 repositories
  • qgraph Public

    ROBOKOP UI

    RobokopU24/qgraph’s past year of commit activity
    JavaScript 1 0 46 2 Updated Nov 13, 2024
  • ORION Public

    Code that parses datasets from various sources and converts them to load graph databases.

    RobokopU24/ORION’s past year of commit activity
    Python 12 MIT 13 40 (1 issue needs help) 12 Updated Nov 8, 2024
  • robokop-genetics Public

    Tools and service wrappers for building Robokop graphs.

    RobokopU24/robokop-genetics’s past year of commit activity
    Python 0 MIT 1 0 1 Updated Sep 3, 2024
  • api-docs Public
    RobokopU24/api-docs’s past year of commit activity
    JavaScript 0 MIT 0 0 0 Updated Aug 5, 2024
  • landing-page Public
    RobokopU24/landing-page’s past year of commit activity
    TypeScript 0 1 0 0 Updated Jul 15, 2024
  • NewSourceProposals Public

    New Knowledge Providers (KPs) for the Data Management Oversight Group (DMOG) to review

    RobokopU24/NewSourceProposals’s past year of commit activity
    0 0 61 0 Updated Jul 8, 2024
  • biolink-triple-demo Public
    RobokopU24/biolink-triple-demo’s past year of commit activity
    TypeScript 0 0 0 0 Updated May 21, 2024
  • kg-summarizer Public
    RobokopU24/kg-summarizer’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 27, 2024
  • RoboDocumentation Public

    Documentation for ROBOKOP.

    RobokopU24/RoboDocumentation’s past year of commit activity
    Jupyter Notebook 0 1 2 1 Updated Oct 23, 2023
  • AOP-use-cases Public

    Collection of Jupyter notebooks addressing the AOP-focused use cases.

    RobokopU24/AOP-use-cases’s past year of commit activity
    Jupyter Notebook 0 0 0 1 Updated Oct 23, 2023
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