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[FIX] add matplotlib envvar, fix non-writeable cache dir error #102

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merged 2 commits into from
Aug 10, 2023
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[FIX] add matplotlib envvar, fix non-writeable cache dir error #102

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aa8b35d
add matplotlib envvar, fix non-writeable cache dir error
bpinsard Aug 9, 2023
9f824dc
Update scripts/singularity_cmd
bpinsard Aug 9, 2023
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4 changes: 4 additions & 0 deletions scripts/singularity_cmd
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Expand Up @@ -78,6 +78,10 @@ if [ -n "${DATALAD_CONTAINER_NAME:-}" ]; then
export APPTAINERENV_DATALAD_CONTAINER_NAME="$DATALAD_CONTAINER_NAME"
fi

# fix non-writable matplotlib cache dir in apptainer https://github.com/ReproNim/containers/issues/97
export SINGULARITYENV_MPLCONFIGDIR=/tmp/mpl-config
export APPTAINERENV_MPLCONFIGDIR=/tmp/mpl-config

# singularity bind mounts system /tmp, which might result in side-effects
# Create a dedicated temporary directory to be removed upon completion
# Mac's tmpdir (with default options) causes problems when a singularity
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