fix: add --no-datalad-get for bids-mriqc invocation (current and futu… #129
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| name: Tests | |
| on: | |
| push: | |
| pull_request: | |
| jobs: | |
| base-test: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: | |
| - macos-latest | |
| - ubuntu-20.04 | |
| steps: | |
| - name: Check out repository | |
| uses: actions/checkout@v4 | |
| - name: Install dependencies (Ubuntu) | |
| if: startsWith(matrix.os, 'ubuntu') | |
| run: | | |
| # So we get all backports etc | |
| bash <(wget -q -O- http://neuro.debian.net/_files/neurodebian-travis.sh) | |
| sudo apt-get update -qq | |
| sudo apt-get install eatmydata # to speedup some installations | |
| sudo eatmydata apt-get install singularity-container shellcheck bats git-annex-standalone | |
| - name: Install dependencies (macOS) | |
| if: startsWith(matrix.os, 'macos') | |
| run: | | |
| HOMEBREW_NO_AUTO_UPDATE=1 brew install shellcheck | |
| HOMEBREW_NO_AUTO_UPDATE=1 brew install git-annex | |
| HOMEBREW_NO_AUTO_UPDATE=1 brew install bats-core | |
| sudo cp ci/dummy_docker /usr/local/bin/docker | |
| - name: Configure Git identity | |
| run: | | |
| git config --global user.email "[email protected]" | |
| git config --global user.name "CI Almighty" | |
| - name: Fetch git-annex data | |
| run: | | |
| git fetch origin git-annex | |
| git remote add --fetch datalad.datasets.org http://datasets.datalad.org/repronim/containers/.git | |
| git annex upgrade # we need v7 for the unlocked test img | |
| - name: Shellcheck scripts | |
| run: | | |
| find . -name .git -prune -o -type f \ | |
| '!' '(' -name '*.txt' -o -name '*.md' ')' \ | |
| -exec grep -q -m1 '^#!/bin/\(ba\|da\|k\)\?sh' {} ';' \ | |
| -print0 \ | |
| | xargs -0 shellcheck | |
| - name: Run script tests | |
| run: bats -t scripts/tests | |
| # Keeping just in case to debug fails | |
| #- name: Setup tmate session | |
| # if: ${{ failure() }} | |
| # uses: mxschmitt/action-tmate@v3 |