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@RamanLab

Raman Lab, IIT Madras

Computational Systems Biology Lab @ IIT Madras

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  1. FastSL FastSL Public

    A MATLAB toolbox to rapidly evaluate synthetic lethal sets in organisms using the genome-scale metabolic models

    MATLAB 7 7

  2. metquest metquest Public

    Forked from aarthi31/metquest-1

    Enumerating biosynthetic pathways in metabolic networks

    Jupyter Notebook 12 8

  3. ReactionMiner ReactionMiner Public

    Tool to predict (bio)chemical reactions using graph mining.

    C++ 22 10

  4. cobratoolbox cobratoolbox Public

    Forked from opencobra/cobratoolbox

    The COnstraint-Based Reconstruction and Analysis Toolbox

    MATLAB

  5. FastSL-py FastSL-py Public

    Python implementation of FastSL

    Python 1

Repositories

Showing 10 of 48 repositories
  • BenchmCommDetection Public

    Contains the python module to implement community detection algos along with the final results obtained from benchmark analysis

    RamanLab/BenchmCommDetection’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 3, 2025
  • metquest Public Forked from aarthi31/metquest-1

    Enumerating biosynthetic pathways in metabolic networks

    RamanLab/metquest’s past year of commit activity
    Jupyter Notebook 12 GPL-2.0 11 0 1 Updated Jan 2, 2025
  • CAMP Public
    RamanLab/CAMP’s past year of commit activity
    MATLAB 2 0 0 0 Updated Dec 3, 2024
  • COSMOS Public

    Compares monocultures and cocultres in an identical environment to identify the optimal microbial system

    RamanLab/COSMOS’s past year of commit activity
    MATLAB 0 0 0 0 Updated Nov 2, 2024
  • Neobacillus Public

    Neobacillus driksii sp. nov. isolated from a Mars 2020 spacecraft assembly facility and genomic potential for lasso peptide production in Neobacillus

    RamanLab/Neobacillus’s past year of commit activity
    0 0 0 0 Updated Sep 16, 2024
  • fbc_curation_matlab Public

    fbc_curation contains MATLAB/COBRA helpers for reproducibility of fbc models.

    RamanLab/fbc_curation_matlab’s past year of commit activity
    MATLAB 2 LGPL-3.0 2 1 0 Updated Aug 29, 2024
  • phoenix-novel-species Public
    RamanLab/phoenix-novel-species’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 21, 2024
  • NonLinearAdaptation Public

    This repository contains the necessary MATLAB and SIMULINK files for the simulation studies done in the manuscript titled, 'Design Principles for Global, Perfect Adaptation]{Design Principles for Perfect Adaptation in Biological Networks with Nonlinear Dynamics'

    RamanLab/NonLinearAdaptation’s past year of commit activity
    MATLAB 1 0 0 0 Updated May 29, 2024
  • ISS_Enterobacter Public
    RamanLab/ISS_Enterobacter’s past year of commit activity
    Python 0 0 0 0 Updated May 16, 2024
  • Panera Public

    MATLAB repository to construct pan-genus metabolic models (PGMM)

    RamanLab/Panera’s past year of commit activity
    MATLAB 0 0 0 0 Updated May 7, 2024
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