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Update README.md
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abuendia authored Feb 2, 2024
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Expand Up @@ -7,19 +7,11 @@ arcasHLA requires the following utilities:
- [Git Large File Storage](https://github.com/git-lfs/git-lfs/wiki/Installation)
- coreutils

Make sure the following programs are in your `PATH`:
- [Samtools v1.19](http://www.htslib.org/)
- [bedtools v2.27.1](http://bedtools.readthedocs.io/)
- [pigz v2.3.1](https://zlib.net/pigz/)
- [Kallisto v0.44.0](https://pachterlab.github.io/kallisto/)
- python 3.6

arcasHLA requires the following Python modules:
- [Biopython v1.77 (or lower)](https://biopython.org/wiki/Download)
- numpy
- scipy
- pandas
- pytest
Install and activate the required conda environment `arcas-hla` through the `[environment.yml](./environment.yml) file:
```
conda create -n environment.yml
conda activate arcas-hla
```

### Test ###

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