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#2422 #2244

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Mar 7, 2024
Merged

#2422 #2244

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9 changes: 7 additions & 2 deletions code/ARAX/ARAXQuery/ARAX_ranker.py
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Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,7 @@
from openapi_server.models.edge import Edge
from openapi_server.models.attribute import Attribute

edge_confidence_manual_agent = 0.999

def _get_nx_edges_by_attr(G: Union[nx.MultiDiGraph, nx.MultiGraph], key: str, val: str) -> Set[tuple]:
res_set = set()
Expand Down Expand Up @@ -550,7 +551,7 @@ def aggregate_scores_dmk(self, response):
kg_edge_id_to_edge = self.kg_edge_id_to_edge
score_stats = self.score_stats
no_non_inf_float_flag = True
for edge_key,edge in message.knowledge_graph.edges.items():
for edge_key, edge in message.knowledge_graph.edges.items():
kg_edge_id_to_edge[edge_key] = edge
if edge.attributes is not None:
for edge_attribute in edge.attributes:
Expand Down Expand Up @@ -586,9 +587,13 @@ def aggregate_scores_dmk(self, response):
response.info(f"Summary of available edge metrics: {score_stats}")

# Loop over the entire KG and normalize and combine the score of each edge, place that information in the confidence attribute of the edge
for edge_key,edge in message.knowledge_graph.edges.items():
for edge_key, edge in message.knowledge_graph.edges.items():
if edge.attributes is not None:
edge_attributes = {x.original_attribute_name:x.value for x in edge.attributes}
for edge_attribute in edge.attributes:
if edge_attribute.attribute_type_id == "biolink:agent_type" and edge_attribute.value == "manual_agent":
edge.confidence = edge_confidence_manual_agent
break
else:
edge_attributes = {}
if edge_attributes.get("confidence", None) is not None:
Expand Down
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