Feat/individuals #259

mvergez · 2023-11-24T12:58:31Z

Depends on PnX-SI/GeoNature#2740
Closes #213

mvergez · 2024-01-09T08:08:25Z

Pour ceux que ça intéresse, j'ai créé ce petit sous module qui permet de créer un protocole de suivi d'individus monospécifique. Cela permet de confirmer que la PR fonctionne bien

test_individuals_module.tar.gz

mvergez · 2024-01-09T10:28:30Z

Et un protocole de suivi d'individus multi espèces :
test_individuals_module_multi.tar.gz

codecov · 2024-03-01T15:32:53Z

Codecov Report

Attention: Patch coverage is 0% with 27 lines in your changes are missing coverage. Please review.

Project coverage is 0.14%. Comparing base (579d972) to head (f955ed3).
Report is 2 commits behind head on develop.

❗ Current head f955ed3 differs from pull request most recent head dba9cdf

Please upload reports for the commit dba9cdf to get more accurate results.

Files	Patch %	Lines
backend/gn_module_monitoring/monitoring/objects.py	0.00%	10 Missing ⚠️
...kend/gn_module_monitoring/monitoring/serializer.py	0.00%	7 Missing ⚠️
backend/gn_module_monitoring/monitoring/models.py	0.00%	5 Missing ⚠️
...end/gn_module_monitoring/monitoring/definitions.py	0.00%	2 Missing ⚠️
...nd/gn_module_monitoring/monitoring/repositories.py	0.00%	2 Missing ⚠️
backend/gn_module_monitoring/routes/data_utils.py	0.00%	1 Missing ⚠️

Additional details and impacted files

@@            Coverage Diff             @@
##           develop    #259      +/-   ##
==========================================
- Coverage     0.14%   0.14%   -0.01%     
==========================================
  Files           23      23              
  Lines         1345    1368      +23     
==========================================
  Hits             2       2              
- Misses        1343    1366      +23

Flag	Coverage Δ
pytest	`0.14% <0.00%> (-0.01%)`	⬇️

Flags with carried forward coverage won't be shown. Click here to find out more.

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

From individual.json

Otherwise it goes into data

Add a global variable __MODULE.CD_NOM, stored in the t_module_complements table. It enables the user to provide the CD_NOM several times in the json config files like __MODULE.ID_LIST_TAXONOMY for instance...

And new cd_nom setting

Since it has been moved to GeoNature

ViewOnly & scalar_subquery()

Reviewed-by: andriacap

Reviewed-by: andriac

Change revises to match with the one used Remove useless "pass" Reviewed-by: andriac

Reviewed-by: andriacap

andriacap · 2024-05-21T09:22:03Z

La PR PnX-SI/GeoNature#2740 ne doit plus être pris en compte .

C'est cette PR qui doit être prise en compte : PnX-SI/GeoNature#3056

Un protocole de test est disponible sur cette branche : https://github.com/naturalsolutions/protocoles_suivi/tree/protocole-test-suivi-individu

problem with query to find number of site and individuals Reviewed-by: andriacap

Reviewed-by: andriacap

Add nb_inidivuals property as before but write notes to understand why it was needed ? It seems to work without .. (tried) Reviewed-by: andriacap

Reviewed-by: andriacap

- need to change alembic in order to be usable for update of monitoring and for install monitoring from scratch Reviewed-by: andriacap

Reviewed-by: andriacap

* Script sql de migration des permissions * Changelog

…_sites" This reverts commit 4091e60.

Reviewed-by: andriacap

mvergez force-pushed the feat/individuals branch 2 times, most recently from b02c532 to c971619 Compare December 21, 2023 11:13

mvergez marked this pull request as ready for review January 9, 2024 11:15

andriacap force-pushed the feat/individuals branch from f955ed3 to 396e99f Compare April 16, 2024 08:00

Maxime Vergez added 23 commits May 21, 2024 10:11

feat(db): add migration for individuals

f052df0

refactor(db): move base individuals tables to GN

14d29b8

feat(api): add orm models

aa4f048

feat(api): add definition, linking to orm models

93c4936

feat(api): add more attributes to orm models

a81b133

refactor(api): move everything to GeoNature

94be1be

feat(api): specific model dict for individuals

eaa2779

feat(config): add first individual json file

6367d8a

feat(api): more config to individuals.json

7870ffa

refactor: update config following changes in model

9fd2dd8

feat(api): add soft delete

9a8a294

style: apply black

ee8d5df

refactor(api): add marking as a individual child

a2145b1

refactor(config): mv marking props to marking.json

6ee2e0e

From individual.json

feat(api): add nb_sites for individuals

8c4b11c

feat(api): add nb_individuals to site

cc6cce3

feat: add individuals to site.json

8b67e0f

feat(db): add id_individual col to observations

f93d0f9

feat(api): add id_individual column

7b42584

feat(api): add id_individual in observation.json

e7c2d8e

Otherwise it goes into data

feat(api): add individual permissions

817249b

docs: add individual docs

e2680a9

docs: fix details and add more

01ac8bf

Maxime Vergez and others added 13 commits May 21, 2024 10:11

feat(api): add cd_nom parameter for the module

9009143

Add a global variable __MODULE.CD_NOM, stored in the t_module_complements table. It enables the user to provide the CD_NOM several times in the json config files like __MODULE.ID_LIST_TAXONOMY for instance...

docs: update docs following required id_module

fd04340

And new cd_nom setting

feat(api): remove relationship

e902100

Since it has been moved to GeoNature

chore(api): fix sqlalchemy warning

e90a8f0

ViewOnly & scalar_subquery()

feat(config): hide cd_nom by default

f475a54

feat(api): really delete object no deactivation

27678c7

style(api): apply black

4ad23cc

docs: more doc for individiuals

d16bd25

fix: disable viewOnl=True to remove warning

fddadcc

fix: reorder revisions to make it ok for clean install

53ef966

fix: cd_nom missing on post observation

45a7ca4

Reviewed-by: andriacap

fix: change revises migration to the good one

36ddd1f

Reviewed-by: andriac

fix: replace revises by the good one and rm pass

66ae097

Change revises to match with the one used Remove useless "pass" Reviewed-by: andriac

andriacap force-pushed the feat/individuals branch from 396e99f to 66ae097 Compare May 21, 2024 08:30

style(backend): apply backend

536fddb

Reviewed-by: andriacap

andriacap and others added 9 commits May 22, 2024 16:01

fix: nb_individus and nb_sites for Tindividuals

8c5048e

problem with query to find number of site and individuals Reviewed-by: andriacap

fix: add distinct on nb_individuals for site

5aeffc2

Reviewed-by: andriacap

refactor: add nb_individuals outside models

b04db06

Add nb_inidivuals property as before but write notes to understand why it was needed ? It seems to work without .. (tried) Reviewed-by: andriacap

style(backend) apply black

dba9cdf

Reviewed-by: andriacap

fix(back): change order alembic revision

93220d7

- need to change alembic in order to be usable for update of monitoring and for install monitoring from scratch Reviewed-by: andriacap

fix(backend): warning sqlalchemy

05fb478

Reviewed-by: andriacap

fix(back): manage if no nomenclature value is empty

c69532a

Reviewed-by: andriacap

style(back): apply black

8662d99

Reviewed-by: andriacap

Fix/clean transfert permissions ALL TO MONTORING_XXX (PnX-SI#291)

5b0de36

* Script sql de migration des permissions * Changelog

andriacap force-pushed the feat/individuals branch from b458547 to 5b0de36 Compare July 5, 2024 15:22

DonovanMaillard and others added 4 commits August 12, 2024 11:15

fix medias for individuals & marking events + TIndividuals.nb_sites

4091e60

Revert "fix medias for individuals & marking events + TIndividuals.nb…

a4f061c

…_sites" This reverts commit 4091e60.

fix medias for individuals & marking events + TIndividuals.nb_sites

bbf60c3

style(backend): apply black

ed3c3b9

Reviewed-by: andriacap

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Feat/individuals #259

Feat/individuals #259

mvergez commented Nov 24, 2023

mvergez commented Jan 9, 2024

mvergez commented Jan 9, 2024 •

edited

Loading

codecov bot commented Mar 1, 2024 •

edited

Loading

andriacap commented May 21, 2024 •

edited

Loading

Feat/individuals #259

Are you sure you want to change the base?

Feat/individuals #259

Conversation

mvergez commented Nov 24, 2023

mvergez commented Jan 9, 2024

mvergez commented Jan 9, 2024 • edited Loading

codecov bot commented Mar 1, 2024 • edited Loading

Codecov Report

andriacap commented May 21, 2024 • edited Loading

mvergez commented Jan 9, 2024 •

edited

Loading

codecov bot commented Mar 1, 2024 •

edited

Loading

andriacap commented May 21, 2024 •

edited

Loading