Hotfix/sqla1.4

src/ref_geo/commands.py

@@ -1,6 +1,6 @@
 import click
 from flask.cli import with_appcontext
-from sqlalchemy import func, column
+from sqlalchemy import func, select
 
 from ref_geo.env import db
 from ref_geo.models import BibAreasTypes, LAreas
@@ -16,10 +16,10 @@ def ref_geo():
 def info():
     click.echo("RefGeo : nombre de zones par type")
     q = (
-        db.session.query(BibAreasTypes, func.count(LAreas.id_area).label("count"))
+        select(BibAreasTypes, func.count(LAreas.id_area).label("count"))
         .join(LAreas)
         .group_by(BibAreasTypes.id_type)
         .order_by(BibAreasTypes.id_type)
     )
-    for area_type, count in q.all():
+    for area_type, count in db.session.scalars(q).unique().all():
         click.echo("\t{}: {}".format(area_type.type_name, count))

src/ref_geo/routes.py

@@ -4,7 +4,7 @@
 from flask import Blueprint, request, current_app
 from flask.json import jsonify
 import sqlalchemy as sa
-from sqlalchemy import func, distinct, asc, desc
+from sqlalchemy import func, select, asc, desc
 from sqlalchemy.sql import text
 from sqlalchemy.orm import joinedload, undefer
 from werkzeug.exceptions import BadRequest
@@ -58,8 +58,10 @@ def getGeoInfo():
         raise BadRequest("Missing 'geometry' in request payload")
     geojson = json.dumps(geojson)
 
-    areas = LAreas.query.filter_by(enable=True).filter(
-        geojson_intersect_filter.params(geojson=geojson)
+    areas = (
+        select(LAreas)
+        .filter_by(enable=True)
+        .filter(geojson_intersect_filter.params(geojson=geojson))
     )
     if "area_type" in request.json:
         areas = areas.join(BibAreasTypes).filter_by(type_code=request.json["area_type"])
@@ -75,7 +77,7 @@ def getGeoInfo():
     return jsonify(
         {
             "areas": AreaSchema(only=["id_area", "id_type", "area_code", "area_name"]).dump(
-                areas.all(), many=True
+                db.session.scalars(areas).unique().all(), many=True
             ),
             "altitude": altitude,
         }
@@ -116,8 +118,10 @@ def getAreasIntersection():
         raise BadRequest("Missing 'geometry' in request payload")
     geojson = json.dumps(geojson)
 
-    areas = LAreas.query.filter_by(enable=True).filter(
-        geojson_intersect_filter.params(geojson=geojson)
+    areas = (
+        select(LAreas)
+        .filter_by(enable=True)
+        .filter(geojson_intersect_filter.params(geojson=geojson))
     )
     if "area_type" in request.json:
         areas = areas.join(BibAreasTypes).filter_by(type_code=request.json["area_type"])
@@ -130,7 +134,9 @@ def getAreasIntersection():
     areas = areas.order_by(LAreas.id_type)
 
     response = {}
-    for id_type, _areas in groupby(areas.all(), key=lambda area: area.id_type):
+    for id_type, _areas in groupby(
+        db.session.scalars(areas).unique().all(), key=lambda area: area.id_type
+    ):
         _areas = list(_areas)
         response[id_type] = _areas[0].area_type.as_dict(fields=["type_code", "type_name"])
         response[id_type].update(
@@ -157,13 +163,13 @@ def get_municipalities():
     """
     parameters = request.args
 
-    q = db.session.query(LiMunicipalities).order_by(LiMunicipalities.nom_com.asc())
+    q = select(LiMunicipalities).order_by(LiMunicipalities.nom_com.asc())
 
     if "nom_com" in parameters:
-        q = q.filter(LiMunicipalities.nom_com.ilike("{}%".format(parameters.get("nom_com"))))
+        q = q.where(LiMunicipalities.nom_com.ilike("{}%".format(parameters.get("nom_com"))))
     limit = int(parameters.get("limit")) if parameters.get("limit") else 100
 
-    municipalities = q.limit(limit)
+    municipalities = db.session.scalars(q.limit(limit)).all()
     return jsonify(MunicipalitySchema().dump(municipalities, many=True))
 
 
@@ -176,8 +182,8 @@ def get_areas():
     # change all args in a list of value
     params = {key: request.args.getlist(key) for key, value in request.args.items()}
 
-    q = (
-        db.session.query(LAreas)
+    query = (
+        select(LAreas)
         .options(joinedload("area_type").load_only("type_code"))
         .order_by(LAreas.area_name.asc())
     )
@@ -192,33 +198,34 @@ def get_areas():
             }
             return response, 400
         if enable_param == "true":
-            q = q.filter(LAreas.enable == True)
+            query = query.where(LAreas.enable == True)
         elif enable_param == "false":
-            q = q.filter(LAreas.enable == False)
+            query = query.where(LAreas.enable == False)
     else:
-        q = q.filter(LAreas.enable == True)
+        query = query.where(LAreas.enable == True)
 
     if "id_type" in params:
-        q = q.filter(LAreas.id_type.in_(params["id_type"]))
+        query = query.where(LAreas.id_type.in_(params["id_type"]))
 
     if "type_code" in params:
-        q = q.filter(LAreas.area_type.has(BibAreasTypes.type_code.in_(params["type_code"])))
+        query = query.where(LAreas.area_type.has(BibAreasTypes.type_code.in_(params["type_code"])))
 
     if "area_name" in params:
-        q = q.filter(LAreas.area_name.ilike("%{}%".format(params.get("area_name")[0])))
+        query = query.where(LAreas.area_name.ilike("%{}%".format(params.get("area_name")[0])))
 
     limit = int(params.get("limit")[0]) if params.get("limit") else 100
 
-    areas = q.limit(limit)
-
     # allow to format response
     format = request.args.get("format", default="", type=str)
 
     fields = {"area_type.type_code"}
     if format == "geojson":
         fields |= {"+geom_4326"}
-        areas = areas.options(undefer("geom_4326"))
-    response = AreaSchema(only=fields, as_geojson=format == "geojson").dump(areas.all(), many=True)
+        query = query.options(undefer("geom_4326"))
+
+    areas = db.session.scalars(query.limit(limit)).unique().all()
+
+    response = AreaSchema(only=fields, as_geojson=format == "geojson").dump(areas, many=True)
     if format == "geojson":
         # retro-compat: return a list of Features instead of the FeatureCollection
         response = response["features"]
@@ -242,7 +249,7 @@ def get_area_size():
         raise BadRequest("Missing 'geometry' in request payload")
     geojson = json.dumps(geojson)
 
-    query = db.session.query(area_size_func.params(geojson=geojson))
+    query = select(area_size_func.params(geojson=geojson))
 
     return jsonify(db.session.execute(query).scalar())
 
@@ -261,25 +268,23 @@ def get_area_types():
     type_code = request.args.get("code")
     type_name = request.args.get("name")
     sort = request.args.get("sort")
-    query = db.session.query(BibAreasTypes)
+    query = select(BibAreasTypes)
     # GET ONLY INFO FOR A SPECIFIC CODE
     if type_code:
-        code_exists = (
-            db.session.query(BibAreasTypes)
-            .filter(BibAreasTypes.type_code == type_code)
-            .one_or_none()
-        )
+        code_exists = db.session.execute(
+            select(BibAreasTypes).where(BibAreasTypes.type_code == type_code)
+        ).scalar_one_or_none()
         if not code_exists:
             raise BadRequest("This area type code does not exist")
-        query = query.filter(BibAreasTypes.type_code == type_code)
+        query = query.where(BibAreasTypes.type_code == type_code)
     # FILTER BY NAME
     if type_name:
-        query = query.filter(BibAreasTypes.type_name.ilike("%{}%".format(type_name)))
+        query = query.where(BibAreasTypes.type_name.ilike("%{}%".format(type_name)))
     # SORT
     if sort == "asc":
         query = query.order_by(asc("type_name"))
     if sort == "desc":
         query = query.order_by(desc("type_name"))
     # FIELDS
     fields = ["type_name", "type_code", "id_type"]
-    return jsonify(AreaTypeSchema(only=fields).dump(query.all(), many=True))
+    return jsonify(AreaTypeSchema(only=fields).dump(db.session.scalars(query).all(), many=True))

src/ref_geo/tests/test_ref_geo.py

@@ -10,6 +10,7 @@
 
 from ref_geo.env import db
 from ref_geo.models import BibAreasTypes, LAreas
+from sqlalchemy import select
 
 
 polygon = {
@@ -42,7 +43,7 @@ def has_french_dem():
 
 @pytest.fixture(scope="function")
 def area_commune():
-    return BibAreasTypes.query.filter_by(type_code="COM").one()
+    return db.session.execute(select(BibAreasTypes).filter_by(type_code="COM")).scalar_one()
 
 
 @pytest.mark.usefixtures("client_class", "temporary_transaction")
@@ -302,7 +303,7 @@ def test_get_areas_as_geojson(self, area_commune):
         """
         type_code = area_commune.type_code
         id_type = area_commune.id_type
-        first_comm = LAreas.query.filter(LAreas.id_type == id_type).first()
+        first_comm = db.session.scalars(db.select(LAreas).where(LAreas.id_type == id_type)).first()
         # will test many responses are return
         response = self.client.get(
             url_for("ref_geo.get_areas"),