trigger #35

	name: Liat Workflow

	on:
	push:
	branches:
	- liats/wip/ci_cd

	permissions:
	id-token: write
	contents: read

	jobs:
	create-conda-env:
	runs-on: ubuntu-latest
	container:
	image: amazonlinux:2
	steps:
	# Install tar and gzip for code checkout
	- name: Install tar
	run: yum install -y tar gzip

	- name: Checkout Code
	uses: actions/checkout@v3 # Checks out the repository under $GITHUB_WORKSPACE.

	- name: Setup conda
	uses: conda-incubator/[email protected]
	with:
	activate-environment: pheno
	python-version: 3.11
	- name: Conda info
	shell: bash -el {0}
	run: conda info
	- name: Pheno Utils
	shell: bash -el {0}
	run: conda install pheno-utils
	# - name: Install conda
	# continue-on-error: true
	# run: \|
	# curl -sS -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
	# bash Miniconda3-latest-Linux-x86_64.sh -b -u -p $HOME/miniconda

	# - name: Create conda environment
	# run : \|
	# export PATH=$HOME/miniconda/bin:$PATH
	# conda init bash
	# # conda create -q -n test-env python=3.10 > /dev/null
	# # conda init bash > /dev/null
	# # conda activate test-env
	# # conda install pheno-utils

	- name: Configure AWS Credentials
	uses: aws-actions/configure-aws-credentials@v3
	with:
	role-to-assume: arn:aws:iam::081569964966:role/github_cicd
	aws-region: eu-west-1

	- name: Create and Upload Artifact to S3
	run: \|
	# Example of creating a tar.gz archive and uploading it
	echo "Uploading artifact to S3"
	# tar -czvf artifact.tar.gz /path/to/your/files
	# aws s3 cp artifact.tar.gz s3://YOUR_S3_BUCKET_NAME/path/to/upload/

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