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trigger

trigger #31

Workflow file for this run

name: Liat Workflow
on:
push:
branches:
- liats/wip/ci_cd
permissions:
id-token: write
contents: read
jobs:
create-conda-env:
runs-on: ubuntu-latest
container:
image: amazonlinux:2
steps:
# Install tar and gzip for code checkout
- name: Install tar
run: yum install -y tar gzip
- name: Checkout Code
uses: actions/[email protected] # Checks out the repository under $GITHUB_WORKSPACE.
- name: Install conda
continue-on-error: true
run: |
curl -sS -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh
bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda
export PATH=$HOME/miniconda/bin:$PATH
conda init bash > /dev/null
conda update -q conda
conda info -a
- name: Create conda environment
continue-on-error: true
run : |
export PATH=$HOME/miniconda/bin:$PATH
conda init bash > /dev/null
conda create -q -n test-env python=3.10 > /dev/null
conda init bash > /dev/null
conda activate test-env
conda install pheno-utils
- name: Configure AWS Credentials
uses: aws-actions/[email protected]
with:
role-to-assume: arn:aws:iam::081569964966:role/github_cicd
aws-region: eu-west-1
- name: Create and Upload Artifact to S3
run: |
# Example of creating a tar.gz archive and uploading it
echo "Uploading artifact to S3"
# tar -czvf artifact.tar.gz /path/to/your/files
# aws s3 cp artifact.tar.gz s3://YOUR_S3_BUCKET_NAME/path/to/upload/