trigger #26
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Liat Workflow | |
on: | |
push: | |
branches: | |
- liats/wip/ci_cd | |
permissions: | |
id-token: write | |
contents: read | |
jobs: | |
create-conda-env: | |
runs-on: ubuntu-latest | |
container: | |
image: amazonlinux:2 | |
steps: | |
# Install tar and gzip for code checkout | |
- name: Install tar | |
run: yum install -y tar gzip | |
- name: Checkout Code | |
continue-on-error: true | |
uses: actions/checkout@v2 # Checks out the repository under $GITHUB_WORKSPACE. | |
- name: Install conda | |
run: | | |
curl -O https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh | |
bash Miniconda3-latest-Linux-x86_64.sh -b -p $HOME/miniconda | |
conda config --set always_yes yes --set changeps1 no | |
conda update -q conda | |
conda info -a | |
- name: Create conda environment | |
continue-on-error: true | |
run : | | |
export PATH=$HOME/miniconda/bin:$PATH | |
conda init bash | |
conda create -n test-env python=3.10 | |
conda activate test-env | |
conda install pheno-utils | |
conda list | |
- name: Configure AWS Credentials | |
uses: aws-actions/configure-aws-credentials@v3 | |
with: | |
role-to-assume: arn:aws:iam::081569964966:role/github_cicd | |
aws-region: eu-west-1 | |
- name: Create and Upload Artifact to S3 | |
run: | | |
# Example of creating a tar.gz archive and uploading it | |
echo "Uploading artifact to S3" | |
# tar -czvf artifact.tar.gz /path/to/your/files | |
# aws s3 cp artifact.tar.gz s3://YOUR_S3_BUCKET_NAME/path/to/upload/ |