v1.2

New or improved features

• Python 3 support (not yet Python 3.4 compatible due to limitations of current version of Pysam).
• Include strand of m-tuple in output.

Minor improvements

• Updated examples to use Bismark v0.12.2 (closes #65).
• Update data/run_comethylation.sh to use command line interface introduced in v1.1.
• Improved filtering of specific read-positions.

Bug fixes

• Fixed bug that meant the sum of the overlap scores was incorrect for paired-end reads aligned to the OT-strand.