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Add validate SBML script #6

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merged 2 commits into from
Nov 22, 2023
Merged

Add validate SBML script #6

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9824d5e
Add validate SBML script
pgleeson Nov 22, 2023
6769625
Install pynml
pgleeson Nov 22, 2023
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5 changes: 5 additions & 0 deletions .github/workflows/non-omv.yml
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Expand Up @@ -43,6 +43,11 @@ jobs:
pip install python-libsedml
python test_tellurium.py

- name: Test validity of files
run: |
pip install pyNeuroML
cd SBML
./validateAll.sh

- name: Final version info
run: |
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8 changes: 8 additions & 0 deletions SBML/validateAll.sh
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@@ -0,0 +1,8 @@
#!/bin/bash
set -ex

### A script to validate SBML (& SED-ML) files using pyNeuroML

pynml -validate-sbml LEMS_NML2_Ex9_FN.sbml

pynml -validate-sbml Run_Regular_HindmarshRose.sbml