store cache and sett Agg for matplotlib to prevent matplotlib windows… #471
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name: Testing non OMV scripts | |
on: | |
push: | |
branches: [ master, development, experimental, test*, feature/* ] | |
pull_request: | |
branches: [ master, development, experimental, test*, feature/* ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [ "3.10", "3.11" ] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install OMV | |
run: | | |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
- name: Run tests | |
run: | | |
omv install jneuroml | |
- name: Test tellurium | |
run: | | |
pip install tellurium | |
sudo apt-get install libncurses5 --fix-missing | |
cd tellurium | |
python simple.py -nogui | |
cd ../SBML/tests | |
pip install python-libsedml | |
python ./test_tellurium.py | |
- name: Test validity of files | |
run: | | |
pip install pyNeuroML pyNeuroML[annotations] | |
cd SBML/tests | |
./validateAll.sh | |
- name: Test omex file creation | |
run: | | |
pip install "pymetadata>=0.4.2" docker "requests<2.32.0" | |
cd SBML/tests | |
python ./test_biosimulators_docker.py | |
- name: Test test_suite output regeneration | |
run: | | |
cd test_suite | |
./test_results_regeneration.sh | |
- name: Final version info | |
run: | | |
omv list -V # list installed engines | |
pip list | |
env | |
- name: Create results table | |
run: | | |
cd SBML/tests | |
python ./test_creation_combined_results_table.py |