draft BioModels compatibility table #158
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name: Testing non OMV scripts (locally using docker) | |
on: | |
push: | |
branches: [ master, development, experimental, test*, feature/* ] | |
pull_request: | |
branches: [ master, development, experimental, test*, feature/* ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [ 3.9, "3.10" ] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
pip install pyNeuroML[annotations] | |
pip install python-libsedml | |
pip install tellurium | |
sudo apt-get install libncurses5 --fix-missing | |
omv install jneuroml | |
pip install "pymetadata>=0.4.2" docker "requests<2.32.0" | |
- name: Final version info | |
run: | | |
omv list -V # list installed engines | |
pip list | |
env | |
- name: Test local biosimulators compatibility table creation | |
run: | | |
cd SBML/tests | |
sudo rm -rf output | |
python ./test_biosimulators_local.py --output-dir=tmp_plots | |