Merge pull request #70 from OpenSourceBrain/feature/68-add-remote-lin… #156
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
name: Testing non OMV scripts (locally using docker) | |
on: | |
push: | |
branches: [ master, development, experimental, test*, feature/* ] | |
pull_request: | |
branches: [ master, development, experimental, test*, feature/* ] | |
jobs: | |
build: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
python-version: [ 3.9, "3.10" ] | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install dependencies | |
run: | | |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation | |
pip install pyNeuroML[annotations] | |
pip install python-libsedml | |
pip install tellurium | |
sudo apt-get install libncurses5 --fix-missing | |
omv install jneuroml | |
pip install "pymetadata>=0.4.2" docker "requests<2.32.0" | |
- name: Final version info | |
run: | | |
omv list -V # list installed engines | |
pip list | |
env | |
- name: Test local biosimulators compatibility table creation | |
run: | | |
cd SBML/tests | |
sudo rm -rf output | |
python ./test_biosimulators_local.py --output-dir=tmp_plots | |