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Merge branch 'development' into feature/67-update-test-suite-results #154

Merge branch 'development' into feature/67-update-test-suite-results

Merge branch 'development' into feature/67-update-test-suite-results #154

name: Testing non OMV scripts (remotely via URLs)
on:
push:
branches: [ master, development, experimental, test*, feature/* ]
pull_request:
branches: [ master, development, experimental, test*, feature/* ]
jobs:
build:
runs-on: ubuntu-latest
strategy:
fail-fast: false
matrix:
python-version: [ 3.9, "3.10" ]
steps:
- uses: actions/checkout@v4
- name: Set up Python ${{ matrix.python-version }}
uses: actions/setup-python@v5
with:
python-version: ${{ matrix.python-version }}
- name: Install dependencies
run: |
pip install git+https://github.com/OpenSourceBrain/osb-model-validation
pip install pyNeuroML[annotations]
pip install python-libsedml
pip install tellurium
sudo apt-get install libncurses5 --fix-missing
omv install jneuroml
pip install "pymetadata>=0.4.2" docker "requests<2.32.0"
- name: Final version info
run: |
omv list -V # list installed engines
pip list
env
- name: Check health status of biosimulations API
run: |
cd SBML/tests
python ./test_biosimulators_api.py
- name: Test remote biosimulators compatibility table creation
run: |
cd SBML/tests
sudo rm -rf output
python ./test_biosimulators_remote.py --output-dir=tmp_plots