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Merge pull request #915 from OpenSourceBrain/feature/871
Installs NEST, OMV, sbml libs, updates mdf, pytorch in jupyterlab environment
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@@ -11,7 +11,7 @@ git+https://github.com/Neurosim-lab/netpyne.git@osbv2#egg=netpyne | |
#### Other simulators | ||
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# Arbor | ||
arbor==0.6.0 | ||
arbor==0.9.0 | ||
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# EDEN | ||
eden-simulator==0.2.1 | ||
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@@ -42,10 +42,10 @@ seaborn | |
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# Note: this just installs pytorch for cpu, the default install adds a v large cuda lib | ||
-f https://download.pytorch.org/whl/torch_stable.html | ||
torch==1.11.0+cpu | ||
torch==2.1.2+cpu | ||
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# For MDF | ||
modeci_mdf==0.4.5 # big jump in size of image... | ||
modeci_mdf==0.4.8 # big jump in size of image... | ||
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scikit-learn # Required for some Neuromatch Academy material | ||
fasttext # Required for some Neuromatch Academy material | ||
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@@ -57,8 +57,18 @@ tvb-data | |
ipympl | ||
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#### SBML/COMBINE packages | ||
python-libsbml | ||
tellurium | ||
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#### General Python packages | ||
plotly | ||
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#### Install OMV | ||
git+https://github.com/OpenSourceBrain/[email protected] | ||
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#### Final updates | ||
numpy # Removes some issues with LFPy... |