Merge pull request #60 from OpenSourceBrain/development

Added initMembPotential to all
OpenSourceBrain · Jun 14, 2024 · e753a6f · e753a6f
2 parents 78cce96 + 0777729
commit e753a6f
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Showing 346 changed files with 861 additions and 423 deletions.
diff --git a/.gitignore b/.gitignore
@@ -320,3 +320,169 @@ original.v.dat
 /CellTypesDatabase/models/GLIF/*json
 arm64
 /CellTypesDatabase/models/.DS_Store
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diff --git a/CellTypesDatabase/models/NeuroML2/Cell_329321704.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_329321704.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Im.channel.nml"/>
     <include href="Ih.channel.nml"/>
     <include href="NaTs.channel.nml"/>
@@ -17201,6 +17201,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="1.0 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="2.040851513206537 uF_per_cm2" segmentGroup="dend"/>
                 <specificCapacitance value="2.040851513206537 uF_per_cm2" segmentGroup="apic"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_329321704" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_329322394.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_329322394.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Im.channel.nml"/>
     <include href="Ih.channel.nml"/>
     <include href="NaTs.channel.nml"/>
@@ -8364,6 +8364,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="1.0 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="3.6151999126546923 uF_per_cm2" segmentGroup="dend"/>
                 <specificCapacitance value="3.6151999126546923 uF_per_cm2" segmentGroup="apic"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_329322394" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_471081668.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_471081668.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Ih.channel.nml"/>
     <include href="NaV.channel.nml"/>
     <include href="Kd.channel.nml"/>
@@ -13149,6 +13149,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="4.37184796398 uF_per_cm2" segmentGroup="soma"/>
                 <specificCapacitance value="4.37184796398 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="4.37184796398 uF_per_cm2" segmentGroup="dend"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_471081668" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_471085845.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_471085845.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Ih.channel.nml"/>
     <include href="NaV.channel.nml"/>
     <include href="Kd.channel.nml"/>
@@ -16078,6 +16078,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="1.22540369589 uF_per_cm2" segmentGroup="soma"/>
                 <specificCapacitance value="1.22540369589 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="1.22540369589 uF_per_cm2" segmentGroup="dend"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_471085845" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_471086533.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_471086533.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Ih.channel.nml"/>
     <include href="NaV.channel.nml"/>
     <include href="Kd.channel.nml"/>
@@ -11891,6 +11891,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="0.959691125845 uF_per_cm2" segmentGroup="soma"/>
                 <specificCapacitance value="0.959691125845 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="0.959691125845 uF_per_cm2" segmentGroup="dend"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_471086533" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_471087975.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_471087975.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Im.channel.nml"/>
     <include href="Ih.channel.nml"/>
     <include href="NaTs.channel.nml"/>
@@ -21958,6 +21958,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="1.0 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="2.7783095305603056 uF_per_cm2" segmentGroup="dend"/>
                 <specificCapacitance value="2.7783095305603056 uF_per_cm2" segmentGroup="apic"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_471087975" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>

diff --git a/CellTypesDatabase/models/NeuroML2/Cell_472299294.cell.nml b/CellTypesDatabase/models/NeuroML2/Cell_472299294.cell.nml
@@ -1,4 +1,4 @@
-<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.xsd" id="NeuroML2_file_exported_from_NEURON">
+<neuroml xmlns="http://www.neuroml.org/schema/neuroml2"  xmlns:xs="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.neuroml.org/schema/neuroml2 https://raw.github.com/NeuroML/NeuroML2/development/Schemas/NeuroML2/NeuroML_v2.3.1.xsd" id="NeuroML2_file_exported_from_NEURON">
     <include href="Im.channel.nml"/>
     <include href="Ih.channel.nml"/>
     <include href="NaTs.channel.nml"/>
@@ -9823,6 +9823,7 @@ Electrophysiology on which this model is based: http://celltypes.brain-map.org/m
                 <specificCapacitance value="1.0 uF_per_cm2" segmentGroup="axon"/>
                 <specificCapacitance value="3.0750189775170296 uF_per_cm2" segmentGroup="dend"/>
                 <specificCapacitance value="3.0750189775170296 uF_per_cm2" segmentGroup="apic"/>
+                <initMembPotential value="-80mV"/>
             </membraneProperties>
             <intracellularProperties>
                 <species id="ca" concentrationModel="CaDynamics_472299294" ion="ca" initialConcentration="0.0001 mM" initialExtConcentration="2 mM" segmentGroup="soma"/>