Merge pull request #626 from OpenAPC/hzdr_data_corrections

Hzdr data corrections
OpenAPC · Jun 5, 2019 · b1b3277 · b1b3277
2 parents 23b5dac + 0478aac
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diff --git a/README.md b/README.md
@@ -12,7 +12,7 @@ The aim of this repository is:
 - to release datasets on fees paid for Open Access journal articles by Universities and Research Society Funds under an Open Database License
 - to demonstrate how reporting on fee-based Open Access publishing can be made more transparent and reproducible across institutions.
 
-At the moment this project provides cost data on 78,778 open access journal articles, amounting to € 153,293,639 and contributed by 238 institutions.
+At the moment this project provides cost data on 78,775 open access journal articles, amounting to € 153,280,905 and contributed by 238 institutions.
 
 [![Build Status](https://travis-ci.org/OpenAPC/openapc-de.svg?branch=master)](https://travis-ci.org/OpenAPC/openapc-de)&nbsp;&nbsp;([What's this?](https://github.com/OpenAPC/openapc-de/wiki/Data-Integrity-Testing))
 
@@ -326,9 +326,9 @@ Jisc Collections released data on APC payments made by UK higher education insti
 
 ## Dataset
 
-This dataset contains information on 78,778 open access journal articles being published in fully and hybrid open access journal. Publication fees for these articles were supported financially by 238 research performing institutions and research funders. 
+This dataset contains information on 78,775 open access journal articles being published in fully and hybrid open access journal. Publication fees for these articles were supported financially by 238 research performing institutions and research funders. 
 
-In total, publication fee spending covered by the Open APC initiative amounted to € 153,293,639. The average payment was € 1,946  and the median was € 1,745.
+In total, publication fee spending covered by the Open APC initiative amounted to € 153,280,905. The average payment was € 1,946  and the median was € 1,745.
 
 View dataset on [GitHub](https://github.com/OpenAPC/openapc-de/blob/master/data/apc_de.csv) or take a look at our [treemap visualisations](http://treemaps.intact-project.org).
 
@@ -342,7 +342,7 @@ View dataset on [GitHub](https://github.com/OpenAPC/openapc-de/blob/master/data/
 
 
 
-46,492 articles in the dataset were published in fully open access journals. Total spending on publication fees for these articles amounts to € 72,435,724, including value-added tax; the average payment was € 1,558 (median =  € 1,475, SD = € 754).
+46,489 articles in the dataset were published in fully open access journals. Total spending on publication fees for these articles amounts to € 72,422,991, including value-added tax; the average payment was € 1,558 (median =  € 1,475, SD = € 753).
 
 The following table summarises institutional spending on articles published in fully open access journals.
 
@@ -433,9 +433,9 @@ The following table summarises institutional spending on articles published in f
 |University of Reading                                           |      125|               196,774|   1,574 (642)|  1,543|      130 -  4,453|
 |INRA                                                            |      124|               202,035|   1,629 (641)|  1,405|      282 -  3,700|
 |Aix-Marseille Université                                        |      123|               181,635|   1,477 (652)|  1,305|      333 -  3,960|
-|HZDR                                                            |      116|               171,305|   1,477 (897)|  1,296|      236 -  6,512|
 |Norwegian University of Science and Technology                  |      115|               162,119|   1,410 (492)|  1,420|      183 -  3,554|
 |Indiana University - Purdue University Indianapolis (IUPUI)     |      114|               166,599|   1,461 (685)|  1,362|      212 -  4,920|
+|HZDR                                                            |      113|               158,572|   1,403 (740)|  1,285|      236 -  4,000|
 |Oslo University Hospital                                        |      111|               149,777|   1,349 (373)|  1,392|      232 -  2,725|
 |University of Debrecen                                          |      100|               154,134|   1,541 (794)|  1,655|       69 -  3,689|
 |TU Chemnitz                                                     |       98|               113,365|   1,157 (600)|  1,249|       78 -  2,123|

diff --git a/data/apc_de.csv b/data/apc_de.csv
@@ -15092,15 +15092,13 @@
 "HZDR",2014,1209.04,"10.1186/s13550-014-0043-5",FALSE,"Springer Science + Business Media","EJNMMI Research","2191-219X",NA,"2191-219X","2191-219X",NA,TRUE,"25136512","PMC4129469","ut:000358049700001",NA,TRUE
 "HZDR",2014,1080,"10.1088/0953-8984/25/5/054202",TRUE,"IOP Publishing","Journal of Physics: Condensed Matter","0953-8984","0953-8984","1361-648X","0953-8984","http://iopscience.iop.org/page/copyright",TRUE,"23441326",NA,"ut:000313567500004",NA,FALSE
 "HZDR",2014,1046,"10.1038/srep07003",FALSE,"Nature Publishing Group","Scientific Reports","2045-2322",NA,"2045-2322","2045-2322","http://www.springer.com/tdm",TRUE,"25384532","PMC4227009","ut:000344760100018",NA,TRUE
-"HZDR",2015,3110.66,"10.1016/j.physletb.2015.05.034",FALSE,"Elsevier BV","Physics Letters B","0370-2693","0370-2693",NA,"0370-2693","http://creativecommons.org/licenses/by/4.0/",TRUE,NA,NA,"ut:000358624800006",NA,TRUE
 "HZDR",2015,1995,"10.1002/advs.201500017",FALSE,"Wiley-Blackwell","Advanced Science","2198-3844",NA,NA,"2198-3844","http://doi.wiley.com/10.1002/tdm_license_1.1",TRUE,"27980936","PMC5115361","ut:000368943300003",NA,TRUE
 "HZDR",2015,1485,"10.3390/molecules20069847",FALSE,"MDPI AG","Molecules","1420-3049",NA,"1420-3049","1420-3049","https://creativecommons.org/licenses/by/4.0/",TRUE,"26023942","PMC6272543","ut:000357992700022",NA,TRUE
 "HZDR",2015,1165,"10.1038/srep08329",FALSE,"Springer Nature","Scientific Reports","2045-2322",NA,"2045-2322","2045-2322","http://www.springer.com/tdm",TRUE,"25660096","PMC4321182","ut:000348990600018",NA,TRUE
 "HZDR",2015,1165,"10.1038/srep08999",FALSE,"Springer Nature","Scientific Reports","2045-2322",NA,"2045-2322","2045-2322","http://www.springer.com/tdm",TRUE,"25758040","PMC4355737","ut:000351138300014",NA,TRUE
 "HZDR",2015,3700,"10.1038/ncomms9175",FALSE,"Springer Nature","Nature Communications","2041-1723",NA,"2041-1723","2041-1723","http://www.springer.com/tdm",TRUE,"26381700","PMC4595605","ut:000363017100002",NA,TRUE
 "HZDR",2015,638.82,"10.3389/fphy.2015.00035",FALSE,"Frontiers Media SA","Frontiers in Physics","2296-424X",NA,"2296-424X","2296-424X",NA,TRUE,NA,NA,"ut:000387261100001",NA,TRUE
 "HZDR",2015,1485,"10.3390/molecules20069591",FALSE,"MDPI AG","Molecules","1420-3049",NA,"1420-3049","1420-3049","https://creativecommons.org/licenses/by/4.0/",TRUE,"26016549","PMC6272448","ut:000357992700009",NA,TRUE
-"HZDR",2015,3110.66,"10.1016/j.physletb.2015.04.019",FALSE,"Elsevier BV","Physics Letters B","0370-2693","0370-2693",NA,"0370-2693","http://creativecommons.org/licenses/by/4.0/",TRUE,NA,NA,"ut:000353892000063",NA,TRUE
 "HZDR",2015,1170,"10.1088/1367-2630/17/11/113044",FALSE,"IOP Publishing","New Journal of Physics","1367-2630",NA,"1367-2630","1367-2630","http://creativecommons.org/licenses/by/3.0/",TRUE,NA,NA,"ut:000365898100002",NA,TRUE
 "HZDR",2015,854.54,"10.1364/oe.23.020732",FALSE,"Optical Society of America (OSA)","Optics Express","1094-4087",NA,"1094-4087","1094-4087",NA,TRUE,"26367925",NA,"ut:000361036400049",NA,FALSE
 "HZDR",2015,3480,"10.1038/bcj.2015.73",FALSE,"Springer Nature","Blood Cancer Journal","2044-5385",NA,"2044-5385","2044-5385","http://www.springer.com/tdm",TRUE,"26383821","PMC4648523","ut:000368919100002",NA,TRUE
@@ -22627,7 +22625,6 @@
 "HZDR",2016,1210.33,"10.1371/journal.pone.0145652",FALSE,"Public Library of Science (PLoS)","PLOS ONE","1932-6203",NA,"1932-6203","1932-6203","http://creativecommons.org/licenses/by/4.0/",TRUE,"26717509","PMC4696651","ut:000367510500053",NA,TRUE
 "HZDR",2016,1354.93,"10.1371/journal.pone.0156785",FALSE,"Public Library of Science (PLoS)","PLOS ONE","1932-6203",NA,"1932-6203","1932-6203","http://creativecommons.org/licenses/by/4.0/",TRUE,"27285458","PMC4902306","ut:000377564000021",NA,TRUE
 "HZDR",2016,1080.96,"10.4236/jmp.2016.78077",FALSE,"Scientific Research Publishing, Inc,","Journal of Modern Physics","2153-1196","2153-1196","2153-120X","2153-1196","http://creativecommons.org/licenses/by/4.0/",TRUE,NA,NA,NA,NA,FALSE
-"HZDR",2016,6511.97,"10.1016/j.physletb.2016.01.062",FALSE,"Elsevier BV","Physics Letters B","0370-2693","0370-2693",NA,"0370-2693","http://creativecommons.org/licenses/by/4.0/",TRUE,NA,NA,"ut:000373568100025",NA,TRUE
 "HZDR",2016,1504,"10.1111/jcmm.12808",FALSE,"Wiley-Blackwell","Journal of Cellular and Molecular Medicine","1582-1838",NA,NA,"1582-1838","http://doi.wiley.com/10.1002/tdm_license_1.1",TRUE,"26928771","PMC4831350","ut:000374835800006",NA,FALSE
 "HZDR",2016,4000,"10.1002/open.201500207",FALSE,"Wiley-Blackwell","ChemistryOpen","2191-1363",NA,NA,"2191-1363","http://creativecommons.org/licenses/by-nc/4.0/",TRUE,"27957406","PMC5130165","ut:000379681700001",NA,TRUE
 "HZDR",2016,1398,"10.1038/srep34193",FALSE,"Springer Nature","Scientific Reports","2045-2322",NA,"2045-2322","2045-2322","http://www.springer.com/tdm",TRUE,"27680399","PMC5040963","ut:000384176800001",NA,TRUE

diff --git a/data/hzdr/APC_2016_openAPC.csv b/data/hzdr/APC_2016_openAPC.csv
@@ -18,7 +18,7 @@ Helmholtz-Zenrum Dresden-Rossendorf;2016;1039,00;10.1364/OE.24.022628 ;FALSE;OSA
 Helmholtz-Zenrum Dresden-Rossendorf;2016;1210,33;10.1371/journal.pone.0145652 ;FALSE;PLoS;PLoSOne
 Helmholtz-Zenrum Dresden-Rossendorf;2016;1354,93;10.1371/journal.pone.0156785;FALSE;PLoS;PLoSOne
 Helmholtz-Zenrum Dresden-Rossendorf;2016;1080,96;10.4236/jmp.2016.78077;FALSE;Scientific Research Publishing;Journal of Modern Physics
-Helmholtz-Zenrum Dresden-Rossendorf;2016;6511,97;10.1016/j.physletb.2016.01.062;FALSE;Elsevier;Physics Letters B
+
 Helmholtz-Zenrum Dresden-Rossendorf;2016;1170,00;10.1088/1367-2630/17/12/123019 ;FALSE;IOP;New Journal of Physics  (IOP)
 Helmholtz-Zenrum Dresden-Rossendorf;2016;1504,00;10.1111/jcmm.12808 ;FALSE;Wiley;Journal of Cellular and Molecular Medicine
 Helmholtz-Zenrum Dresden-Rossendorf;2016;4000,00;10.1002/open.201500207 ;FALSE;Wiley;Chemistry open

diff --git a/data/hzdr/APC_2016_openAPC_enriched.csv b/data/hzdr/APC_2016_openAPC_enriched.csv
@@ -18,7 +18,7 @@
 "HZDR",2016,1210.33,"10.1371/journal.pone.0145652",FALSE,"Public Library of Science (PLoS)","PLOS ONE","1932-6203",NA,"1932-6203","1932-6203","http://creativecommons.org/licenses/by/4.0/",TRUE,"26717509","PMC4696651","ut:000367510500053",NA,TRUE
 "HZDR",2016,1354.93,"10.1371/journal.pone.0156785",FALSE,"Public Library of Science (PLoS)","PLOS ONE","1932-6203",NA,"1932-6203","1932-6203","http://creativecommons.org/licenses/by/4.0/",TRUE,"27285458","PMC4902306","ut:000377564000021",NA,TRUE
 "HZDR",2016,1080.96,"10.4236/jmp.2016.78077",FALSE,"Scientific Research Publishing, Inc,","Journal of Modern Physics","2153-1196","2153-1196","2153-120X","2153-1196","http://creativecommons.org/licenses/by/4.0/",TRUE,NA,NA,NA,NA,FALSE
-"HZDR",2016,6511.97,"10.1016/j.physletb.2016.01.062",FALSE,"Elsevier BV","Physics Letters B","0370-2693","0370-2693",NA,"0370-2693","http://www.elsevier.com/tdm/userlicense/1.0/",TRUE,NA,NA,"ut:000373568100025",NA,TRUE
+
 
 "HZDR",2016,1504,"10.1111/jcmm.12808",FALSE,"Wiley-Blackwell","Journal of Cellular and Molecular Medicine","1582-1838",NA,NA,"1582-1838","http://doi.wiley.com/10.1002/tdm_license_1.1",TRUE,"26928771","PMC4831350","ut:000374835800006",NA,FALSE
 "HZDR",2016,4000,"10.1002/open.201500207",FALSE,"Wiley-Blackwell","ChemistryOpen","2191-1363",NA,NA,"2191-1363","http://doi.wiley.com/10.1002/tdm_license_1",TRUE,"27957406","PMC5130165","ut:000379681700001",NA,TRUE

diff --git a/data/hzdr/HGF_OA_pubgebuehren_2014_2015_1.csv b/data/hzdr/HGF_OA_pubgebuehren_2014_2015_1.csv
@@ -19,7 +19,7 @@ Helmholtz-Zenrum Dresden-Rossendorf;2014;1209,04;10.1186/s13550-014-0043-5;FALSE
 
 Helmholtz-Zenrum Dresden-Rossendorf;2014;1080;10.1088/0953-8984/25/5/054202;FALSE;IOP;New Journal of Physics
 Helmholtz-Zenrum Dresden-Rossendorf;2014;1046;10.1038/srep07003;FALSE;Nature;Scientific Reports
-Helmholtz-Zenrum Dresden-Rossendorf;2015;3110,66;10.1016/j.physletb.2015.05.034;FALSE;Elsevier;Physics Letters B
+
 
 Helmholtz-Zenrum Dresden-Rossendorf;2015;1995;10.1002/advs.201500017;FALSE;Wiley;Advanced Science 
 Helmholtz-Zenrum Dresden-Rossendorf;2015;1485;10.3390/molecules20069847;FALSE;MDPI;Molecules 
@@ -35,7 +35,7 @@ Helmholtz-Zenrum Dresden-Rossendorf;2015;1485;10.3390/molecules20069591;FALSE;MD
 
 
 
-Helmholtz-Zenrum Dresden-Rossendorf;2015;3110,66;10.1016/j.physletb.2015.04.019;FALSE;Elsevier;Physics Letters B
+
 
 Helmholtz-Zenrum Dresden-Rossendorf;2015;1170;10.1088/1367-2630/17/11/113044;FALSE;IOP;New Journal of Physics 
 

diff --git a/data/hzdr/HGF_OA_pubgebuehren_2014_2015_1_enriched.csv b/data/hzdr/HGF_OA_pubgebuehren_2014_2015_1_enriched.csv
@@ -19,7 +19,7 @@
 "",,,"","","","","","","","","","","","","","",""
 "HZDR",2014,1080,"10.1088/0953-8984/25/5/054202",TRUE,"IOP Publishing","Journal of Physics: Condensed Matter","0953-8984","0953-8984","1361-648X","0953-8984",NA,TRUE,"23441326",NA,NA,NA,FALSE
 "HZDR",2014,1046,"10.1038/srep07003",FALSE,"Nature Publishing Group","Scientific Reports","2045-2322",NA,"2045-2322","2045-2322",NA,TRUE,"25384532","PMC4227009",NA,NA,TRUE
-"HZDR",2015,3110.66,"10.1016/j.physletb.2015.05.034",FALSE,"Elsevier BV","Physics Letters B","03702693","03702693",NA,"0370-2693","http://www.elsevier.com/tdm/userlicense/1.0/",TRUE,NA,NA,NA,NA,FALSE
+"",,,"","","","","","","","","","","","","","",""
 "",,,"","","","","","","","","","","","","","",""
 "HZDR",2015,1995,"10.1002/advs.201500017",FALSE,"Wiley-Blackwell","Advanced Science","21983844",NA,NA,"2198-3844","http://doi.wiley.com/10.1002/tdm_license_1",TRUE,NA,NA,NA,NA,FALSE
 "HZDR",2015,1485,"10.3390/molecules20069847",FALSE,"MDPI AG","Molecules","1420-3049",NA,"1420-3049","1420-3049",NA,TRUE,"26023942",NA,NA,NA,TRUE
@@ -35,7 +35,7 @@
 "",,,"","","","","","","","","","","","","","",""
 "",,,"","","","","","","","","","","","","","",""
 "",,,"","","","","","","","","","","","","","",""
-"HZDR",2015,3110.66,"10.1016/j.physletb.2015.04.019",FALSE,"Elsevier BV","Physics Letters B","03702693","03702693",NA,"0370-2693","http://www.elsevier.com/tdm/userlicense/1.0/",TRUE,NA,NA,NA,NA,FALSE
+"",,,"","","","","","","","","","","","","","",""
 "",,,"","","","","","","","","","","","","","",""
 "HZDR",2015,1170,"10.1088/1367-2630/17/11/113044",FALSE,"IOP Publishing","New Journal of Physics","1367-2630",NA,"1367-2630","1367-2630","http://iopscience.iop.org/info/page/text-and-data-mining",TRUE,NA,NA,NA,NA,TRUE
 "",,,"","","","","","","","","","","","","","",""

diff --git a/figure/boxplot_oa.png b/figure/boxplot_oa.png