Clean up `*_mat_entry_set` calls #2943

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Job	Run time
Documentation	16m 19s
test (1.6, ubuntu-latest)	6m 8s
test (1.10, ubuntu-latest)	5m 56s
test (1.11, ubuntu-latest)	7m 40s
test (nightly, ubuntu-latest)	7m 59s
test (1.10, macOS-latest)	3m 20s
test (1.10, windows-latest)	7m 40s
	55m 2s