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Add ctests for running GETKF in split mode and move reference files i…
…nto repo (#175) This PR adds ctests and yaml files for running GETKF in split observer and solver mode. Running GETKF in this form is currently the most efficient option since the observer can be run using the RoundRobin distribution (see #122). Reference files are also added for these two new ctests and are added into the repo (see below).
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81
rrfs-test/testinput/rrfs_mpasjedi_2024052700_getkf_observer.yaml
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| Original file line number | Diff line number | Diff line change |
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| _member: &memberConfig | ||
| date: &analysisDate '2024-05-27T00:00:00Z' | ||
| state variables: [spechum,surface_pressure,temperature,uReconstructMeridional,uReconstructZonal,theta,rho,u,qv,pressure,landmask,xice,snowc,skintemp,ivgtyp,isltyp,snowh,vegfra,u10,v10,lai,smois,tslb,pressure_p,qc,qi,qg,qr,qs,cldfrac] | ||
| stream name: ensemble | ||
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| geometry: | ||
| nml_file: ./namelist.atmosphere | ||
| streams_file: ./streams.atmosphere | ||
| deallocate non-da fields: true | ||
| interpolation type: unstructured | ||
| iterator dimension: 2 | ||
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| increment variables: [temperature, spechum, uReconstructZonal, uReconstructMeridional, surface_pressure] | ||
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| background: | ||
| members from template: | ||
| template: | ||
| <<: *memberConfig | ||
| filename: ./data/ens/mem%iMember%/restart.2024-05-27_00.00.00.nc | ||
| pattern: %iMember% | ||
| start: 1 | ||
| zero padding: 2 | ||
| nmembers: 30 | ||
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| observations: | ||
| observers: | ||
| - obs space: | ||
| name: sonde | ||
| distribution: | ||
| name: RoundRobin | ||
| obsdatain: | ||
| engine: | ||
| type: H5File | ||
| obsfile: data/obs/rap.t00z.singleobs.ADPUPA.tm00.nc4 | ||
| obsdataout: | ||
| engine: | ||
| type: H5File | ||
| obsfile: ./adpupa_hofx.nc4 | ||
| simulated variables: [airTemperature] | ||
| observed variables: [airTemperature] | ||
| obs operator: | ||
| name: VertInterp | ||
| obs error: | ||
| covariance model: diagonal | ||
| obs localizations: | ||
| - localization method: Horizontal Gaspari-Cohn | ||
| lengthscale: 300e3 # orig | ||
| obs filters: | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: airTemperature | ||
| action: | ||
| name: assign error | ||
| error parameter: 1.2 # K | ||
| defer to post: true | ||
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| driver: | ||
| run as observer only: true | ||
| update obs config with geometry info: false | ||
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| time window: | ||
| begin: 2024-05-26T23:00:00Z | ||
| length: PT2H | ||
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| local ensemble DA: | ||
| solver: GETKF | ||
| use linear observer: true | ||
| vertical localization: # current settings use 12 modulated members | ||
| fraction of retained variance: 0.850 | ||
| lengthscale: 0.55 | ||
| lengthscale units: logp | ||
| inflation: | ||
| rtps: 0.95 | ||
| rtpp: 0.6 | ||
| mult: 1.1 | ||
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| test: | ||
| reference filename: testoutput/rrfs-mpasjedi-getkf-observer.ref | ||
| test output filename: ./rrfs-mpasjedi-getkf-observer.out | ||
| float relative tolerance: 1.0e-3 | ||
| float absolute tolerance: 1.0e-6 |
93 changes: 93 additions & 0 deletions
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rrfs-test/testinput/rrfs_mpasjedi_2024052700_getkf_solver.yaml
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,93 @@ | ||
| _member: &memberConfig | ||
| date: &analysisDate '2024-05-27T00:00:00Z' | ||
| state variables: [spechum,surface_pressure,temperature,uReconstructMeridional,uReconstructZonal,theta,rho,u,qv,pressure,landmask,xice,snowc,skintemp,ivgtyp,isltyp,snowh,vegfra,u10,v10,lai,smois,tslb,pressure_p,qc,qi,qg,qr,qs,cldfrac] | ||
| stream name: ensemble | ||
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| geometry: | ||
| nml_file: ./namelist.atmosphere | ||
| streams_file: ./streams.atmosphere | ||
| deallocate non-da fields: true | ||
| interpolation type: unstructured | ||
| iterator dimension: 2 | ||
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| increment variables: [temperature, spechum, uReconstructZonal, uReconstructMeridional, surface_pressure] | ||
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| background: | ||
| members from template: | ||
| template: | ||
| <<: *memberConfig | ||
| filename: ./data/ens/mem%iMember%/restart.2024-05-27_00.00.00.nc | ||
| pattern: %iMember% | ||
| start: 1 | ||
| zero padding: 2 | ||
| nmembers: 30 | ||
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| observations: | ||
| observers: | ||
| - obs space: | ||
| name: sonde | ||
| distribution: | ||
| name: Halo | ||
| halo size: 1000e3 | ||
| obsdatain: | ||
| engine: | ||
| type: H5File | ||
| obsfile: ../rundir-rrfs_mpasjedi_2024052700_getkf_observer/adpupa_hofx.nc4 | ||
| obsdataout: | ||
| engine: | ||
| type: H5File | ||
| obsfile: ./adpupa_hofx_solver.nc4 | ||
| simulated variables: [airTemperature] | ||
| observed variables: [airTemperature] | ||
| obs operator: | ||
| name: VertInterp | ||
| obs error: | ||
| covariance model: diagonal | ||
| obs localizations: | ||
| - localization method: Horizontal Gaspari-Cohn | ||
| lengthscale: 300e3 # orig | ||
| obs filters: | ||
| - filter: Perform Action | ||
| filter variables: | ||
| - name: airTemperature | ||
| action: | ||
| name: assign error | ||
| error parameter: 1.2 # K | ||
| defer to post: true | ||
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| driver: | ||
| read HX from disk: true | ||
| save posterior ensemble: false | ||
| save prior mean: true | ||
| save posterior mean: true | ||
| do posterior observer: true | ||
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| time window: | ||
| begin: 2024-05-26T23:00:00Z | ||
| length: PT2H | ||
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| local ensemble DA: | ||
| solver: GETKF | ||
| use linear observer: true | ||
| vertical localization: # current settings use 12 modulated members | ||
| fraction of retained variance: 0.850 | ||
| lengthscale: 0.55 | ||
| lengthscale units: logp | ||
| inflation: | ||
| rtps: 0.95 | ||
| rtpp: 0.6 | ||
| mult: 1.1 | ||
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| output mean prior: | ||
| filename: ./bkg.$Y-$M-$D_$h.$m.$s.nc | ||
| stream name: background | ||
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| output: # for outputting mean posterior | ||
| filename: ./ana.$Y-$M-$D_$h.$m.$s.nc | ||
| stream name: analysis | ||
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| test: | ||
| reference filename: testoutput/rrfs-mpasjedi-getkf-solver.ref | ||
| test output filename: ./rrfs-mpasjedi-getkf-solver.out | ||
| float relative tolerance: 1.0e-3 | ||
| float absolute tolerance: 1.0e-6 |
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| Original file line number | Diff line number | Diff line change |
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| Norm of input parameter StdDev: 9.4986412011183896e-01 | ||
| CostJb : Nonlinear Jb = 0.0000000000000000e+00 | ||
| CostJo : Nonlinear Jo(Aircraft) = 1.6277063866803385e+02, nobs = 197, Jo/n = 8.2624689679204999e-01, err = 2.2878461627138713e+00 | ||
| CostJo : Nonlinear Jo(sonde) = 4.6083942594316369e+01, nobs = 96, Jo/n = 4.8004106869079549e-01, err = 1.2699158479229833e+00 | ||
| CostJo : Nonlinear Jo(sonde) = 3.5136386636656073e+02, nobs = 492, Jo/n = 7.1415419993203400e-01, err = 2.6485332421855685e+00 (Monitoring only) | ||
| CostFunction: Nonlinear J = 2.0885458126235022e+02 | ||
| DRPCGMinimizer: reduction in residual norm = 2.7824421531180651e-03 | ||
| CostFunction::addIncrement: Analysis: | ||
| ---------------------------------------------------------------------------------------------------- | ||
| State print | number of fields = 10 | cube sphere face size: C396 | ||
| eastward_wind | Min:-2.4172478440722166e+01 Max:+5.8744213104248047e+01 RMS:+1.1074254228003721e+01 | ||
| northward_wind | Min:-4.6842254638671875e+01 Max:+6.7075992762060139e+01 RMS:+9.1575337935866052e+00 | ||
| u_component_of_native_D_grid_wind | Min:-5.8205993652343750e+01 Max:+2.7109228988747304e+01 RMS:+1.1163967556309810e+01 | ||
| v_component_of_native_D_grid_wind | Min:-6.8115785512445697e+01 Max:+4.6548946380615234e+01 RMS:+9.0728668941041590e+00 | ||
| air_temperature | Min:+1.9858006286621094e+02 Max:+3.1420623779296875e+02 RMS:+2.6052094626363748e+02 | ||
| air_pressure_thickness | Min:+2.0438423156738281e+02 Max:+3.3835468750000000e+03 RMS:+1.8520940188066577e+03 | ||
| specific_humidity | Min:+9.9999997171806854e-10 Max:+1.9826183095574379e-02 RMS:+5.6389210501995727e-03 | ||
| cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+1.1363915032580437e+38 RMS:+1.8745365416579955e+36 | ||
| cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.1363915032580437e+38 RMS:+2.0899721915550581e+36 | ||
| ozone_mass_mixing_ratio | Min:+4.0375940812964473e-08 Max:+1.6066782336565666e-05 RMS:+2.8037513171416430e-06 | ||
| ---------------------------------------------------------------------------------------------------- | ||
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| Norm of input parameter StdDev: 0.949864120111839 | ||
| CostJb : Nonlinear Jb = 0.9028632742725768 | ||
| CostJo : Nonlinear Jo(Aircraft) = 46.00808938648616, nobs = 197, Jo/n = 0.2335436009466303, err = 2.287846162713871 | ||
| CostJo : Nonlinear Jo(sonde) = 31.20243554366136, nobs = 96, Jo/n = 0.3250253702464725, err = 1.269915847922983 | ||
| CostJo : Nonlinear Jo(sonde) = 346.8911603390688, nobs = 492, Jo/n = 0.7050633340224977, err = 2.648533242185569 (Monitoring only) | ||
| CostFunction: Nonlinear J = 78.1133882044201 | ||
| DRPCGMinimizer: reduction in residual norm = 0.005966881060084853 | ||
| CostFunction::addIncrement: Analysis: | ||
| ---------------------------------------------------------------------------------------------------- | ||
| State print | number of fields = 10 | cube sphere face size: C396 | ||
| eastward_wind | Min:-2.4171419042986830e+01 Max:+5.8744213104248047e+01 RMS:+1.1074256913053947e+01 | ||
| northward_wind | Min:-4.6842254638671875e+01 Max:+6.7075992766887268e+01 RMS:+9.1575456881565902e+00 | ||
| u_component_of_native_D_grid_wind | Min:-5.8205993652343750e+01 Max:+2.7108462492609508e+01 RMS:+1.1163970275632899e+01 | ||
| v_component_of_native_D_grid_wind | Min:-6.8115785523746766e+01 Max:+4.6548946380615234e+01 RMS:+9.0728787561097732e+00 | ||
| air_temperature | Min:+1.9858006286621094e+02 Max:+3.1420623779296875e+02 RMS:+2.6052095318275576e+02 | ||
| air_pressure_thickness | Min:+2.0438423156738281e+02 Max:+3.3835468750000000e+03 RMS:+1.8520940211705904e+03 | ||
| specific_humidity | Min:+9.9999997171806854e-10 Max:+1.9826183095574379e-02 RMS:+5.6389233413203753e-03 | ||
| cloud_liquid_ice | Min:+0.0000000000000000e+00 Max:+1.1376105630346728e+38 RMS:+1.8745015174562462e+36 | ||
| cloud_liquid_water | Min:+0.0000000000000000e+00 Max:+1.1376105630346728e+38 RMS:+2.0875908498287738e+36 | ||
| ozone_mass_mixing_ratio | Min:+4.0375940812964473e-08 Max:+1.6066782336565666e-05 RMS:+2.8037513646290239e-06 | ||
| ---------------------------------------------------------------------------------------------------- | ||
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| CostJb : Nonlinear Jb = 0.9033093522182356 | ||
| CostJo : Nonlinear Jo(Aircraft) = 45.9756432627705, nobs = 197, Jo/n = 0.2333788998110178, err = 2.287846162713871 | ||
| CostJo : Nonlinear Jo(sonde) = 31.21293388165803, nobs = 96, Jo/n = 0.3251347279339378, err = 1.269915847922983 | ||
| CostJo : Nonlinear Jo(sonde) = 346.9156273098469, nobs = 492, Jo/n = 0.7051130636379003, err = 2.648533242185569 (Monitoring only) | ||
| CostFunction: Nonlinear J = 78.09188649664675 |
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