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revise tropomi modules for monetio updates #690

revise tropomi modules for monetio updates

revise tropomi modules for monetio updates #690

Workflow file for this run

name: CI
on:
push:
branches: [main, develop]
pull_request:
branches: [main, develop]
workflow_dispatch:
jobs:
test:
name: Test
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
strategy:
matrix:
monet: [cf, dev]
fail-fast: false # always both
steps:
- uses: actions/checkout@v4
- name: Set up Python (micromamba)
uses: mamba-org/setup-micromamba@v1
with:
environment-file: docs/environment-docs.yml
cache-environment: true
create-args: >-
pytest
- if: ${{ matrix.monet == 'dev' }}
name: Install development versions of monet and monetio
run: |
python -m pip list | grep monet
python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monetio/archive/develop.zip
python -m pip install --force-reinstall --no-deps https://github.com/noaa-oar-arl/monet/archive/develop.zip
- name: Versions
run: |
which python
python -m pip list | grep monet
micromamba list | grep monet
python -c "import monetio; print('monetio.__version__', getattr(monetio, '__version__', '?'))"
python -c "import monet; print('monet.__version__', getattr(monet, '__version__', '?'))"
- name: pytest
run: python -m pytest -v melodies_monet
- name: Run docs/examples notebooks as scripts
run: |
cd docs/examples
for f in *.ipynb; do
if [ "$f" == 'idealized.ipynb' ]; then
jupytext --to py $f -o t.py && python t.py || exit 1
fi
done
cd -
- name: Prepare idealized save/read cases
shell: python
run: |
from copy import deepcopy
import yaml
with open('docs/examples/control_idealized.yaml') as f:
ctl = yaml.safe_load(f)
assert {'save', 'read'} < ctl['analysis'].keys()
ctl_save = deepcopy(ctl)
del ctl_save['analysis']['read']
with open('docs/examples/control_idealized_save.yaml', 'w') as f:
yaml.safe_dump(ctl_save, f)
ctl_read = deepcopy(ctl)
del ctl_read['analysis']['save']
with open('docs/examples/control_idealized_read.yaml', 'w') as f:
yaml.safe_dump(ctl_read, f)
- name: Check CLI works
run: |
cd docs/examples
melodies-monet --version
python -m melodies_monet --version
melodies-monet run control_idealized_save.yaml
melodies-monet run control_idealized_read.yaml
cd -
docs:
name: Check docs build
runs-on: ubuntu-latest
defaults:
run:
shell: bash -l {0}
steps:
- uses: actions/checkout@v4
- name: Set up Python (micromamba)
uses: mamba-org/setup-micromamba@v1
with:
environment-file: docs/environment-docs.yml
cache-environment: true
- name: linkcheck
run: sphinx-build -b linkcheck docs docs/_build/linkcheck
- name: sphinx-build -W
run: sphinx-build -b html -W docs docs/_build/html
- name: Check Sphinx failure log
if: ${{ failure() }}
run: |
if [ -e /tmp/sphinx-err* ]; then
for f in /tmp/sphinx-err*; do
echo $f
cat $f
done
fi
lint:
name: Lint
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
- name: Check that .py files have the license header
run: python3 ci/check-for-license-header.py