Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

added new entries to the .yml file #574

Open
wants to merge 2 commits into
base: main
Choose a base branch
from
Open
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
127 changes: 126 additions & 1 deletion resources/nfdi4bioimage.yml
Original file line number Diff line number Diff line change
Expand Up @@ -9339,4 +9339,129 @@ resources:
url:
- https://zenodo.org/records/14510432
- https://doi.org/10.5281/zenodo.14510432


- authors: Rafael Irizarry
description: UMAP is a powerful tool for exploratory data analysis, but without a clear understanding of how it works, it can easily lead to confusion and misinterpretation.
license: UNKNOWN
name: Biologists, stop putting UMAP plots in your papers
publication_date: '2024-12-23'
tags:
- Biology
- Data Analysis
- UMAP
type:
- Blog Post
url: https://simplystatistics.org/posts/2024-12-23-biologists-stop-including-umap-plots-in-your-papers/

- authors: Joachim Goedhart
license: CC BY-NC-SA 4.0
name: DataViz protocols - An introduction to data visualization protocols for wet lab scientists
publication_date: '2024-12-10'
tags:
- Data Visualization
- R
type:
- Book
url:
- https://zenodo.org/records/7257808
- https://joachimgoedhart.github.io/DataViz-protocols/

- authors: Joachim Goedhart
description: The author discusses a number of color palettes that are suitable for coloring graphical elements in plots.
license: UNKNOWN
name: Data Visualization with Flying Colors
publication_date: '2019-08-29'
tags:
- Data Visualization
type:
- Blog Post
url: https://thenode.biologists.com/data-visualization-with-flying-colors/research/

- authors:
- Riccardo Massei
- Björn Grüning
license: CC-BY-4.0
name: Overview of the Galaxy OMERO-suite - Upload images and metadata in OMERO using Galaxy
publication_date: '2024-12-02'
tags:
- OMERO
- Galaxy
- Metadata
type:
- Tutorial
- Framework
- Workflow
url: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/omero-suite/tutorial.html

- authors: Iván Hidalgo-Cenalmor
license: UNKNOWN
name: DL4MicEverywhere – Overcoming reproducibility challenges in deep learning microscopy imaging
publication_date: '2024-07-29'
tags:
- Deep Learning
- Microscopy
- Microsycopy Image Analysis
- Bio Image Analysis
- Artifical Intelligence
type:
- Blog Post
url: https://focalplane.biologists.com/2024/07/29/dl4miceverywhere-overcoming-reproducibility-challenges-in-deep-learning-microscopy-imaging/

- authors: UNKNOWN
license: UNKNOWN
name: New report highlights the scientific impact of open source software
publication_date: UNKNOWN
tags:
- Open Source
- AlphaFold
type:
- Report
- Blog Post
url: https://www.statnews.com/sponsor/2024/11/26/new-report-highlights-the-scientific-impact-of-open-source-software/

- authors:
- Leonid Kostrykin
- Diana Chiang Jurado
license: cc-by-4.0
name: Tracking of mitochondria and capturing mitoflashes
publication_date: '2024-11-20'
tags:
- Bioinformatics
- Bioimage Analysis
type:
- Workflow
- Tutorial
url: https://training.galaxyproject.org/training-material/topics/imaging/tutorials/detection-of-mitoflashes/tutorial.html#tracking-of-mitochondria-and-capturing-mitoflashes

- authors:
- Virginie Uhlmann
- Matthew Hartley
- Josh Moore
- Erin Weisbart
- Assaf Zaritsky
license: cc-by-4.0
name: Making the most of bioimaging data through interdisciplinary interactions
publication_date: '2024-10-23'
tags:
- Bioimage Analysis
- Open Science
- Microscopy Image Analysis
- Microscopy
type:
- Publication
url: https://journals.biologists.com/jcs/article/137/20/jcs262139/362478/Making-the-most-of-bioimaging-data-through

- authors:
- Jakob Nikolas Kather
- Faisal Mahmood
- Florian Jug
description: How can artificial intelligence be used for digital pathology?
license: UNKNOWN
name: Artificial Intelligence for Digital Pathology
publication_date: '2024-11-08'
tags:
- Artificial Intelligence
type:
- Youtube Video
url: https://www.youtube.com/watch?v=Om9tl4Dh2yw

Loading