Skip to content

Issues: NCBI-Hackathons/EDirectCookbook

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

39 Open 10 Closed
39 Open 10 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

How to print an empty field if no data is found?
#63 opened Mar 31, 2023 by panosioannidis
Get coding sequences for a gene id
#61 opened Oct 20, 2022 by snk5040
2
Retrieve all metadata from edirect that is accessible from SRArunTable
#60 opened Sep 27, 2022 by kray02
Download Symbol via EFetch
#59 opened Jun 14, 2022 by mapauley
9
Downloading FASTA Records with GI Number via efetch?
#58 opened Jun 13, 2022 by mapauley
2
Download 1,000 Random Human RefSeq Transcripts
#57 opened Jun 12, 2022 by mapauley
2
getting the fastq reads from accession ids
#56 opened Apr 5, 2022 by Jigyasa3
1
Retrieve bioproject IDs and SRA IDs from PMIDs?
#55 opened Mar 27, 2022 by Jigyasa3
3
Overall design
#54 opened Aug 27, 2021 by xexpanderx
Citation List
#53 opened Apr 24, 2021 by smartdance
curl: (60) SSL certificate problem: unable to get local issuer certificate
#52 opened Jan 12, 2021 by ShuqingL
The importance of adding < /dev/null with while loops
#49 opened Mar 24, 2020 by nickp60
Get Transcription Factors ChiP-seq experiments
#48 opened Dec 17, 2019 by Fnyasimi
get nucleotide sequence by gene ID
#47 opened Oct 27, 2019 by plasmid02
12
Get entries that have specific keyword in the tag "Isolation source"
#46 opened Jul 4, 2019 by jeagull
The efetch command reported BioSamples’ Attributes completely different from those displayed at the NCBI website
#45 opened Jun 26, 2019 by lauraht
2
The “-if” and “-unless” statements in xtract did not seem to work for me when extracting Attributes in BioSample
#44 opened Jun 21, 2019 by lauraht
3
API Keys
#42 opened Jun 6, 2019 by linsalrob
1
Software Version
#41 opened Jun 6, 2019 by linsalrob
1
Extracting Pubmed ID (PMID) for a list of refseq accession number
#40 opened Apr 28, 2019 by tauqeer9
2
Get publication counts per gene per year
#39 opened Mar 29, 2019 by sanyalab
6
HTML code in Pubmed "title" field
#38 opened Nov 19, 2018 by cmonnom
EDirect pulling [crdt] against [entrez] to get all PMID's for 2017 where they don't match
#37 opened Nov 12, 2018 by tomlaheyh
EDirect installation requires LWP::Protocol::https
#36 opened Sep 10, 2018 by linsalrob
1
geoprofiles data format
#33 opened Jul 11, 2018 by rbutleriii
ProTip! Adding no:label will show everything without a label.