Skip to content

Issues: MouseLand/cellpose

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

54 Open 866 Closed
54 Open 866 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

[BUG]NET ERROR: tensors used as indices must be long, byte or bool tensors bug Something isn't working
#1079 opened Dec 20, 2024 by sun1000yao
2
[BUG] 'DenoiseModel' object has no attribute 'train' bug Something isn't working
#1078 opened Dec 19, 2024 by ChaDub
[BUG] possibly issues with anisotropy in cellpose/gui/make_train.py bug Something isn't working
#1076 opened Dec 9, 2024 by MariaTheiss
3
[FEATURE] Intel ARC GPU Support (pytorch-2.5) enhancement New feature or request
#1075 opened Dec 8, 2024 by RAHoebe
[BUG] Cellpose fails when torch version has more than two points bug Something isn't working
#1074 opened Dec 6, 2024 by timtreis
Python based (no gui) way of estimating diameters
#1073 opened Dec 6, 2024 by mat10d
[BUG] error when --diameter is set to 0. bug Something isn't working
#1072 opened Dec 4, 2024 by jazberna1
[BUG] Custom model not able to detect ROIs after training on cyto3, bug Something isn't working
#1071 opened Dec 3, 2024 by duckyaisha
Nucleoplasmic partitioning of individual cells enhancement New feature or request
#1070 opened Dec 3, 2024 by wang748
[BUG] Weird 3D artifact when segmenting cells bug Something isn't working
#1069 opened Dec 3, 2024 by lguerard
how to get vector flow representation? enhancement New feature or request
#1068 opened Dec 2, 2024 by 1819707238
Is there a way to force install Cellpose 2? If version is not specified, it installs Cellpose 3. install install help
#1067 opened Nov 27, 2024 by rmd13
1
Nuclear Mask Dilation: follow up to issue #1009 bug Something isn't working
#1066 opened Nov 26, 2024 by marsdenl
1
[FEATURE] Install the API only enhancement New feature or request
#1065 opened Nov 26, 2024 by nclement-cytoo
[BUG]Value Error when training Cellpose3 bug Something isn't working
#1064 opened Nov 25, 2024 by SelinaHhan
Issues with Cellpose on macOS using the MPS Backend install install help
#1063 opened Nov 23, 2024 by Vijayishwerj
2
[FEATURE] Larger than memory images: performant and scalable distributed implementation for workstations and clusters enhancement New feature or request
#1061 opened Nov 23, 2024 by GFleishman
[BUG] Drawing masks does not work properly at high ROI counts? bug Something isn't working
#1060 opened Nov 22, 2024 by JannikMen
Issue with io.masks_flows_to_seg in notebook example
#1059 opened Nov 21, 2024 by VivekJohnSudhakar
two-photon images segmentation enhancement New feature or request
#1057 opened Nov 21, 2024 by Hansihh1
[BUG] H&E image nucleus segmentation works with v2 but not with v3 bug Something isn't working
#1056 opened Nov 20, 2024 by gdurif
4
[BUG] Issue when running with post-release version of PyTorch bug Something isn't working
#1054 opened Nov 18, 2024 by MeyerBender
Cellpose3 running with Vizgen Post-processing Tool (VPT) enhancement New feature or request
#1053 opened Nov 14, 2024 by KunHHE
CRITICAL:cellpose.io:ERROR: could not read masks from file, can only convert an array of size 1 to a Python scalar
#1052 opened Nov 14, 2024 by jusforwork15
Still having drawing bug where masks wont actually be created once drawn
#1051 opened Nov 14, 2024 by mayishazn
8
ProTip! Updated in the last three days: updated:>2024-12-21.