Bring code coverage back up and change pre-commit

pyproject.toml

@@ -115,10 +115,10 @@ relative_files = true # needed for sonarcloud code coverage
 omit = [
     "tests/*"
 ]
-
+concurrency = ["greenlet", "thread"]
 
 [tool.coverage.report]
-fail_under = 75
+fail_under = 95
 
 [tool.coverage.html]
 directory = "htmlcov"

tests/api/routes/test_auth.py

@@ -0,0 +1,11 @@
+import pytest
+from httpx import AsyncClient
+from pytest_mock import MockerFixture
+
+
+@pytest.mark.asyncio
+async def test_auth_profile(client: AsyncClient, mocker: MockerFixture) -> None:
+    mocker.patch("amt.api.routes.auth.get_user", return_value="test_user_for_auth_profile")
+    response = await client.get("/auth/profile")
+
+    assert b"https://gravatar.com/" in response.content

tests/api/routes/test_project.py

@@ -1,11 +1,22 @@
 from typing import Any
 
 import pytest
-from amt.api.routes.project import set_path
+from amt.api.routes.project import (
+    MeasureUpdate,
+    find_measure_task,
+    find_requirement_task,
+    find_requirement_tasks_by_measure_urn,
+    get_project_context,
+    get_project_or_error,
+    set_path,
+)
+from amt.core.exceptions import AMTNotFound, AMTRepositoryError
 from amt.models import Project
+from amt.schema.task import MovedTask
 from httpx import AsyncClient
 from pytest_mock import MockFixture
 
+from tests.api.routes.test_projects import MockRequest
 from tests.constants import default_project, default_project_with_system_card, default_task
 from tests.database_test_utils import DatabaseTestUtils
 
@@ -35,6 +46,96 @@ async def test_get_project_tasks(client: AsyncClient, db: DatabaseTestUtils) ->
     assert b"Default Task" in response.content
 
 
+@pytest.mark.asyncio
+async def test_get_project_inference(client: AsyncClient, db: DatabaseTestUtils) -> None:
+    # given
+    await db.given([default_project("testproject1"), default_task(project_id=1, status_id=1)])
+
+    # when
+    response = await client.get("/algorithm-system/1/details/model/inference")
+
+    # then
+    assert response.status_code == 200
+    assert response.headers["content-type"] == "text/html; charset=utf-8"
+    assert b'<button id="runInference"' in response.content
+
+
+@pytest.mark.asyncio
+async def test_move_task(client: AsyncClient, db: DatabaseTestUtils, mocker: MockFixture) -> None:
+    # given
+    await db.given(
+        [
+            default_project("testproject1"),
+            default_task(project_id=1, status_id=1),
+            default_task(project_id=1, status_id=1),
+        ]
+    )
+    mocker.patch("fastapi_csrf_protect.CsrfProtect.validate_csrf", new_callable=mocker.AsyncMock)
+    client.cookies["fastapi-csrf-token"] = "1"
+
+    # All -1 flow
+    move_task_json = MovedTask(taskId=1, statusId=1, previousSiblingId=-1, nextSiblingId=-1).model_dump(by_alias=True)
+    response = await client.patch("/algorithm-system/move_task", json=move_task_json, headers={"X-CSRF-Token": "1"})
+
+    # then
+    assert response.status_code == 200
+    assert response.headers["content-type"] == "text/html; charset=utf-8"
+    assert b"Default Task" in response.content
+
+    # All 1 flow
+    move_task_json = MovedTask(taskId=1, statusId=1, previousSiblingId=1, nextSiblingId=1).model_dump(by_alias=True)
+    response = await client.patch("/algorithm-system/move_task", json=move_task_json, headers={"X-CSRF-Token": "1"})
+
+    # then
+    assert response.status_code == 200
+    assert response.headers["content-type"] == "text/html; charset=utf-8"
+    assert b"Default Task" in response.content
+
+
+@pytest.mark.asyncio
+async def test_get_project_context(client: AsyncClient, db: DatabaseTestUtils, mocker: MockFixture) -> None:
+    # given
+    test_project = default_project_with_system_card("testproject1")
+    project_service = mocker.AsyncMock()
+    project_service.get.return_value = test_project
+
+    project, project_context = await get_project_context(
+        project_id=1, projects_service=project_service, request=MockRequest("nl", url="/")
+    )
+    assert project_context["last_edited"] is None
+    assert project == test_project
+
+
+@pytest.mark.asyncio
+async def test_get_project_non_existing_project(client: AsyncClient, db: DatabaseTestUtils) -> None:
+    # given
+    await db.given([default_project("testproject1"), default_task(project_id=1, status_id=1)])
+
+    # when
+    response = await client.get("/algorithm-system/99/details/tasks")
+
+    # then
+    assert response.status_code == 404
+    assert b"The requested page or resource could not be found." in response.content
+
+
+@pytest.mark.asyncio
+async def test_get_project_or_error(client: AsyncClient, db: DatabaseTestUtils, mocker: MockFixture) -> None:
+    # given
+    test_project = default_project("testproject1")
+    project_service = mocker.AsyncMock()
+    project_service.get.return_value = test_project
+
+    # happy flow
+    project = await get_project_or_error(project_id=1, projects_service=project_service, request=mocker.AsyncMock())
+    assert project == test_project
+
+    # unhappy flow
+    project_service.get.side_effect = AMTRepositoryError
+    with pytest.raises(AMTNotFound):
+        _ = await get_project_or_error(project_id=99, projects_service=project_service, request=mocker.AsyncMock())
+
+
 # TODO: Test are now have hard coded URL paths because the system card
 # is fixed for now. Tests need to be refactored and made proper once
 # the actual stored system card in a project is being rendered.
@@ -301,3 +402,92 @@ def test_set_path():  # type: ignore
     project_dict: dict[str, Any] = {}
     set_path(project_dict, "/root", "value5")
     assert project_dict == {"root": "value5"}
+
+
+@pytest.mark.asyncio
+async def test_find_measure_task() -> None:
+    test_project = default_project_with_system_card("testproject1")
+
+    # no matched measure
+    measure = find_measure_task(test_project.system_card, "")
+    assert measure is None
+
+    # matches measure
+    measure = find_measure_task(test_project.system_card, "urn:nl:ak:mtr:bnd-01")
+    assert measure.urn == "urn:nl:ak:mtr:bnd-01"  # pyright: ignore [reportOptionalMemberAccess]
+    assert measure.value is not None  # pyright: ignore [reportOptionalMemberAccess]
+
+    # no measures in system_card
+    test_project.system_card.measures = []
+    measure = find_measure_task(test_project.system_card, "")
+    assert measure is None
+
+
+@pytest.mark.asyncio
+async def test_find_requirement_task() -> None:
+    test_project = default_project_with_system_card("testproject1")
+
+    # no matched requirement
+    requirement = find_requirement_task(test_project.system_card, "")
+    assert requirement is None
+
+    # matches measure
+    requirement = find_requirement_task(test_project.system_card, "urn:nl:ak:ver:aia-05")
+    assert requirement.urn == "urn:nl:ak:ver:aia-05"  # pyright: ignore [reportOptionalMemberAccess]
+    assert requirement.state is not None  # pyright: ignore [reportOptionalMemberAccess]
+
+    # no measures in system_card
+    test_project.system_card.requirements = []
+    requirement = find_measure_task(test_project.system_card, "")
+    assert requirement is None
+
+
+@pytest.mark.asyncio
+async def test_find_requirement_tasks_by_measure_urn() -> None:
+    test_project = default_project_with_system_card("testproject1")
+
+    # no matched requirement
+    with pytest.raises(IndexError):
+        # TODO: this is because it is not coded well change later
+        requirement_tasks = find_requirement_tasks_by_measure_urn(test_project.system_card, "")
+
+    # matches measure
+    requirement_tasks = find_requirement_tasks_by_measure_urn(test_project.system_card, "urn:nl:ak:mtr:bnd-01")
+    assert len(requirement_tasks) == 3
+
+    # empty requirements
+    test_project.system_card.requirements = []
+    with pytest.raises(KeyError):
+        # TODO: this is because it is not coded well change later
+        requirement_tasks = find_requirement_tasks_by_measure_urn(test_project.system_card, "urn:nl:ak:mtr:bnd-01")
+
+
+@pytest.mark.asyncio
+async def test_get_measure(client: AsyncClient, db: DatabaseTestUtils) -> None:
+    # given
+    await db.given([default_project_with_system_card("testproject1")])
+
+    # when
+    response = await client.get("/algorithm-system/1/measure/urn:nl:ak:mtr:bnd-01")
+
+    # then
+    assert response.status_code == 200
+    assert response.headers["content-type"] == "text/html; charset=utf-8"
+    assert b"Gebruik aselecte steekproeven" in response.content
+
+
+@pytest.mark.asyncio
+async def test_update_measure_value(client: AsyncClient, mocker: MockFixture, db: DatabaseTestUtils) -> None:
+    # given
+    await db.given([default_project_with_system_card("testproject1")])
+    client.cookies["fastapi-csrf-token"] = "1"
+    mocker.patch("fastapi_csrf_protect.CsrfProtect.validate_csrf", new_callable=mocker.AsyncMock)
+
+    # happy flow
+    response = await client.post(
+        "/algorithm-system/1/measure/urn:nl:ak:mtr:bnd-01",
+        json={"measure_update": MeasureUpdate(measure_state="done", measure_value="something").model_dump()},
+        headers={"X-CSRF-Token": "1"},
+    )
+    assert response.status_code == 200
+    assert response.headers["content-type"] == "text/html; charset=utf-8"

tests/api/routes/test_projects.py

@@ -1,5 +1,6 @@
+from collections.abc import MutableMapping
 from datetime import UTC, datetime
-from typing import cast
+from typing import Any, cast
 
 import pytest
 from amt.api.routes.projects import get_localized_value
@@ -12,6 +13,7 @@
 from fastapi.requests import Request
 from httpx import AsyncClient
 from pytest_mock import MockFixture
+from starlette.datastructures import URL
 
 from tests.constants import default_instrument, default_project
 from tests.database_test_utils import DatabaseTestUtils
@@ -198,8 +200,13 @@ async def test_post_new_projects_write_system_card(
 
 
 class MockRequest(Request):
-    def __init__(self, lang: str) -> None:
+    def __init__(self, lang: str, scope: MutableMapping[str, Any] | None = None, url: str | None = None) -> None:
+        if scope is None:
+            scope = {}
+        if url:
+            self._url = URL(url=url)
         self.lang = lang
+        self.scope = scope
 
     @property
     def headers(self):  # type: ignore

tests/core/test_authorization.py

@@ -0,0 +1,13 @@
+import pytest
+from amt.core.authorization import get_user
+from pytest_mock import MockerFixture
+
+
+@pytest.mark.asyncio
+def test_get_user(mocker: MockerFixture) -> None:
+    mock_request = mocker.Mock(scope=["session"])
+    mock_request.session = {"user": {"name": "user"}}
+    mock_get_requested_language = mocker.patch("amt.core.authorization.get_requested_language", return_value="nl")
+    user = get_user(mock_request)
+    assert user == {"name": "user", "locale": "nl"}
+    mock_get_requested_language.assert_called_once_with(mock_request)

tests/core/test_db.py

@@ -4,6 +4,7 @@
 import pytest
 from amt.core.db import (
     check_db,
+    init_db,
 )
 from pytest_mock import MockFixture
 from sqlalchemy import select
@@ -13,12 +14,13 @@
 
 
 @pytest.mark.asyncio
-async def test_check_database(monkeypatch: pytest.MonkeyPatch, tmp_path: Path, mocker: MockFixture):
+async def test_check_and_init_database(monkeypatch: pytest.MonkeyPatch, tmp_path: Path, mocker: MockFixture):
     database_file = tmp_path / "database.sqlite3"
     monkeypatch.setenv("APP_DATABASE_FILE", str(database_file))
     org_exec = AsyncSession.execute
     AsyncSession.execute = mocker.AsyncMock()
     await check_db()
+    await init_db()
 
     assert AsyncSession.execute.call_args is not None
     assert str(select(1)) == str(AsyncSession.execute.call_args.args[0])