Update ci-with-conda.yml #17

	name: Python Package using Conda

	on:
	push:
	branches: [ "main" ]
	pull_request:
	branches: [ "main" ]

	jobs:
	build-linux:
	runs-on: ubuntu-latest
	strategy:
	max-parallel: 5

	steps:
	- uses: actions/checkout@v3
	# - name: Set up Python 3.10
	# uses: actions/setup-python@v3
	# with:
	# python-version: '3.10'
	- name: Add conda
	uses: conda-incubator/setup-miniconda@v3
	with:
	auto-update-conda: true
	python-version: '3.10'
	activate-environment: mbarq
	environment-file: mbarq_environment.yaml
	auto-activate-base: false
	- name: test conda
	run: \|
	conda activate mbarq
	conda info
	conda list
	# run: \|
	# # $CONDA is an environment variable pointing to the root of the miniconda directory
	# echo $CONDA/bin >> $GITHUB_PATH
	- name: Install dependencies
	run: \|
	#conda install -c conda-forge mamba python==3.10
	#conda env update --file mbarq_environment.yaml --name base
	conda activate mbarq
	pip install .
	- name: Lint with flake8
	run: \|
	conda activate mbarq
	conda install flake8
	# stop the build if there are Python syntax errors or undefined names
	flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
	# exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
	flake8 . --count --exit-zero --max-complexity=10 --max-line-length=127 --statistics
	- name: Test with pytest
	run: \|
	conda activate mbarq
	conda install pytest
	pytest

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